Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0599
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ... 98 3e-21
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 98 4e-21
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ... 44 4e-09
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 50 1e-06
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 50 1e-06
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 46 1e-05
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 45 3e-05
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 44 6e-05
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 44 8e-05
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 42 2e-04
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 42 3e-04
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 41 5e-04
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 41 7e-04
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 41 7e-04
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 40 0.002
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 40 0.002
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 39 0.003
At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein ... 39 0.003
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 38 0.004
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 38 0.004
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.005
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.005
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 38 0.005
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.005
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 37 0.009
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 36 0.016
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 36 0.021
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 36 0.027
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 36 0.027
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 35 0.036
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 35 0.036
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 35 0.047
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 34 0.063
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 34 0.063
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ... 34 0.063
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 33 0.11
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 33 0.11
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.14
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 33 0.14
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 33 0.14
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 32 0.25
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 32 0.25
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 31 0.44
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 31 0.44
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 30 1.0
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea... 30 1.0
At5g08200.1 68418.m00959 peptidoglycan-binding LysM domain-conta... 29 2.4
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 2.4
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 29 2.4
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 29 2.4
At5g57790.1 68418.m08529 expressed protein 29 3.1
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 29 3.1
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 4.1
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 28 4.1
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 28 4.1
At4g34350.1 68417.m04881 LytB family protein contains Pfam profi... 28 4.1
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 28 4.1
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ... 28 5.4
At1g34000.2 68414.m04216 light stress-responsive one-helix prote... 28 5.4
At1g34000.1 68414.m04215 light stress-responsive one-helix prote... 28 5.4
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ... 27 7.2
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 7.2
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote... 27 7.2
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 27 9.5
At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family... 27 9.5
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 27 9.5
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ... 27 9.5
>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 308
Score = 98.3 bits (234), Expect = 3e-21
Identities = 39/69 (56%), Positives = 49/69 (71%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 367
KTELC ++E G C YGD CQFAHG++ELR + RHP+YKTE+CR + CPYG RCHF
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHF 283
Query: 368 VHNAEEARR 394
H+ E +
Sbjct: 284 RHSLSEQEK 292
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNL 283
YKTE+CR C YG +C F H + E L
Sbjct: 261 YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKL 293
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 97.9 bits (233), Expect = 4e-21
Identities = 39/69 (56%), Positives = 48/69 (69%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 367
KTELC ++E G C YGD CQFAHG+ ELR + RHP+YKTE+CR + CPYG RCHF
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHF 293
Query: 368 VHNAEEARR 394
H+ + R
Sbjct: 294 RHSLTDQER 302
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 260 GVRELRNLQ--RHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 391
G RE L+ R KTELC + G C YG C F H +E R
Sbjct: 218 GEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELR 263
Score = 35.9 bits (79), Expect = 0.021
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRE 271
YKTE+CR +C YG +C F H + +
Sbjct: 271 YKTEVCRMMVTGAMCPYGHRCHFRHSLTD 299
>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 252
Score = 44.4 bits (100), Expect(2) = 4e-09
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 287 RHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 385
+ P +KT +C + + G+CP+G CHF H E
Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSE 172
Score = 37.9 bits (84), Expect = 0.005
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVREL 274
+KT +C ++ G C +G C FAHG EL
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPR-CHFVHNAEEAR 391
+KT+LC F + G CPY CHF H+AEE R
Sbjct: 72 FKTKLCFKFRA-GTCPYSASSCHFAHSAEELR 102
Score = 33.5 bits (73), Expect(2) = 4e-09
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYG-DKCQFAHGVRELR 277
+KT+LC F AG C Y C FAH ELR
Sbjct: 72 FKTKLCFKFR-AGTCPYSASSCHFAHSAEELR 102
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH-GVR------ELRNLQRHPKYKTE-LCRTFHSVGFCPYGP 355
CR F G CKYGD C+++H GVR L N P + C F S GFC +GP
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGP 326
Query: 356 RCHFVH 373
C F H
Sbjct: 327 NCKFDH 332
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL-----CRTFHSVGFCPYGPRCH 364
C+ + G+C YG C++ H +++ + + E C F G C YGP C
Sbjct: 53 CQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCK 112
Query: 365 FVH 373
+ H
Sbjct: 113 YHH 115
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH-----GVRELR-NLQRHP-KYKTELCRTFHSVGFCPYGPR 358
C F + G CKYG C++ H G + + N+ P + + C + G C +G
Sbjct: 96 CEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVA 155
Query: 359 CHFVH 373
C F H
Sbjct: 156 CKFHH 160
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH-GVR------ELRNLQRHPKYKTE-LCRTFHSVGFCPYGP 355
CR F G CKYGD C+++H GVR L N P + C F S GFC +GP
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGP 326
Query: 356 RCHFVH 373
C F H
Sbjct: 327 NCKFDH 332
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL-----CRTFHSVGFCPYGPRCH 364
C+ + G+C YG C++ H +++ + + E C F G C YGP C
Sbjct: 53 CQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCK 112
Query: 365 FVH 373
+ H
Sbjct: 113 YHH 115
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH-----GVRELR-NLQRHP-KYKTELCRTFHSVGFCPYGPR 358
C F + G CKYG C++ H G + + N+ P + + C + G C +G
Sbjct: 96 CEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVA 155
Query: 359 CHFVH 373
C F H
Sbjct: 156 CKFHH 160
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRN 280
+KT LC F+ G C +GDKC FAHG EL N
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAELHN 301
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 277
YKT +C F AG C+ G+ C FAHG+ +LR
Sbjct: 105 YKTRMCAKFR-AGTCRNGELCNFAHGIEDLR 134
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 385
+KT LC F G CP+G +CHF H E
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAE 298
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 302 KTELCRTFHSVGFCPYGPRCHFVH 373
+ +LCR F CPYG RC+F+H
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIH 208
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 394
YKT +C F + G C G C+F H E+ R+
Sbjct: 105 YKTRMCAKFRA-GTCRNGELCNFAHGIEDLRQ 135
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAH 259
+ +LCR F C YGD+C F H
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIH 208
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL----------CRTFHSVGFCPY 349
CR F G CKYGD C+++H L LQ P + C F + GFC +
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKERL--LQSPPTLLNPIVLPARPGQPACGNFKAYGFCKF 324
Query: 350 GPRCHFVHN 376
G C F H+
Sbjct: 325 GANCKFDHS 333
Score = 34.3 bits (75), Expect = 0.063
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRN--LQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
C+ F G C YG+ C++ H + L + + + + G C YGP C + H
Sbjct: 50 CQFFLRTGQCGYGNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDCETGACKYGPTCKYHH 109
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Frame = +2
Query: 203 RPFEEAGVCKYGDKCQFAHGVRE------LRNLQRHPKYKTEL-CRTFHSVGFCPYGPRC 361
+P E G CKYG C++ H L N+ P + E C + G C +G C
Sbjct: 91 QPDCETGACKYGPTCKYHHPKDRNGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVAC 150
Query: 362 HFVH 373
F H
Sbjct: 151 KFHH 154
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPY 349
C + + G+C++G C+F H + H Y +F SVGF PY
Sbjct: 135 CPYYMQTGLCRFGVACKFHHPHPHSQPSNGHSAYAMS---SFPSVGF-PY 180
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 314 CRTFHSVGFCPYGPRCHFVHNAE 382
CR F + G C YG C + H E
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKE 289
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGV 265
C F+ G CK+G C+F H +
Sbjct: 313 CGNFKAYGFCKFGANCKFDHSM 334
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 319
Y E+C F G C GD C+FAHGV E HP +Y+TE C+
Sbjct: 123 YSGEVCPEFRRGGDCSRGDDCEFAHGVFE---CWLHPIRYRTEACK 165
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 245 CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 385
C FAH G + R R +Y E+C F G C G C F H E
Sbjct: 104 CPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFE 151
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 44.0 bits (99), Expect = 8e-05
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 394
+KT +C + G+CP+G +CHF H A E R
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 40.7 bits (91), Expect = 7e-04
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVREL 274
+KT +C +E G C +G KC FAHG EL
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAEL 290
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 394
+KT+LC F + G CPY C+F H EE RR
Sbjct: 92 FKTKLCCKFRA-GTCPYITNCNFAHTVEELRR 122
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 277
+KT+LC F AG C Y C FAH V ELR
Sbjct: 92 FKTKLCCKFR-AGTCPYITNCNFAHTVEELR 121
Score = 33.9 bits (74), Expect = 0.083
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARRRE 400
+K C+ F++ CPYG C F+H+ E +R RE
Sbjct: 173 FKGRHCKKFYTEEGCPYGESCTFLHD-EASRNRE 205
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 319
Y E+C F G C GD+C FAHGV E HP +Y+TE C+
Sbjct: 101 YTGEVCPEFSRHGDCSRGDECGFAHGVFE---CWLHPSRYRTEACK 143
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 245 CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 385
C F+H G + R R Y E+C F G C G C F H E
Sbjct: 82 CPFSHPGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAHGVFE 129
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 290 HP--KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 394
HP YKT++C + S G C YG RCHF H E RR
Sbjct: 201 HPGSNYKTKICDRY-SKGNCTYGDRCHFAHGESELRR 236
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 277
YKT++C + + G C YGD+C FAHG ELR
Sbjct: 206 YKTKICDRYSK-GNCTYGDRCHFAHGESELR 235
Score = 35.1 bits (77), Expect = 0.036
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 251 FAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
F +E+ ++ K++ C F S CP+G CHF+H
Sbjct: 21 FKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAHGV 265
K++ C F C +GD C F H V
Sbjct: 38 KSKPCTKFFSTSGCPFGDNCHFLHYV 63
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 361
Y C F + G CK GD C+FAHGV E HP +Y+T+ C+ G C C
Sbjct: 120 YSGTACPDFRKGG-CKKGDSCEFAHGVFE---CWLHPARYRTQPCK---DGGNC-LRKIC 171
Query: 362 HFVHNAEEAR 391
F H+ ++ R
Sbjct: 172 FFAHSPDQLR 181
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Frame = +2
Query: 191 TELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRH---------PKYKTELCRTFHSVGFC 343
+E C + G CKYG C+F H VR + R K C+ + G C
Sbjct: 104 SEDCSFYMRTGSCKYGSSCKFNHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGC 163
Query: 344 PYGPRCHFVHNAE 382
YG C F H E
Sbjct: 164 KYGESCRFSHMKE 176
Score = 31.9 bits (69), Expect = 0.33
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELR-------NLQRHP-KYKTELCRTFHSVGFCPYGP 355
C + + G CK+ KC++ H L N + P + +C + G C +GP
Sbjct: 340 CTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGP 399
Query: 356 RCHFVHN 376
C F H+
Sbjct: 400 ACRFDHS 406
Score = 29.9 bits (64), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGV 265
+C + G+CK+G C+F H +
Sbjct: 385 MCTHYSRYGICKFGPACRFDHSI 407
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 277
+KT++C F + G C +GD+C FAHG ELR
Sbjct: 214 FKTKICERFSK-GNCTFGDRCHFAHGEAELR 243
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 290 HP--KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 394
HP +KT++C F S G C +G RCHF H E R+
Sbjct: 209 HPGSNFKTKICERF-SKGNCTFGDRCHFAHGEAELRK 244
Score = 33.5 bits (73), Expect = 0.11
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 302 KTELCRTFHSVGFCPYGPRCHFVH 373
K++ C F S CP+G CHF+H
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHN 376
C F++ G CK GD C++AHGV E HP +Y+T LC+ G C F H
Sbjct: 303 CPDFKK-GSCKQGDMCEYAHGVFE---CWLHPAQYRTRLCKD----GMGCNRRVCFFAHA 354
Query: 377 AEEAR 391
EE R
Sbjct: 355 NEELR 359
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 361
Y C F + G C+ GD C++AHGV E HP +Y+T LC+ G C C
Sbjct: 302 YSCVPCPDFRK-GACRRGDMCEYAHGVFE---CWLHPAQYRTRLCK--DGTG-CARRV-C 353
Query: 362 HFVHNAEEAR 391
F H EE R
Sbjct: 354 FFAHTPEELR 363
>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 245
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 361
Y C F G C GD C+FAHGV E HP +Y+T C + G C
Sbjct: 93 YCAVACPAFRN-GACHRGDSCEFAHGVFE---YWLHPARYRTRAC----NAGNLCQRKVC 144
Query: 362 HFVHNAEEARRRE 400
F H E+ R+ E
Sbjct: 145 FFAHAPEQLRQSE 157
>At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 359
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 361
Y C F + G CK GD C+F+HGV E HP +Y+T+ C+ G C C
Sbjct: 119 YSGTACPEFRK-GCCKRGDACEFSHGVFE---CWLHPARYRTQPCK---DGGNCRRRV-C 170
Query: 362 HFVHNAEEAR 391
F H+ ++ R
Sbjct: 171 FFAHSPDQIR 180
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHN 376
C F + G C GD C++AHGV E HP +YKT LC+ G C C F H
Sbjct: 257 CPEFRK-GSCPKGDSCEYAHGVFE---SWLHPAQYKTRLCK--DETG-CA-RKVCFFAHK 308
Query: 377 AEEAR 391
EE R
Sbjct: 309 REEMR 313
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 277
+KT LC F C +G++C++AHG ELR
Sbjct: 80 WKTSLCSYFRREASCSHGNECKYAHGEAELR 110
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 293 PKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRR 397
P +KT LC F C +G C + H E R +
Sbjct: 78 PWWKTSLCSYFRREASCSHGNECKYAHGEAELRMK 112
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 37.9 bits (84), Expect = 0.005
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAH 259
Y+ ++C+ ++E G C YGD C+F H
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLH 260
Score = 33.9 bits (74), Expect = 0.083
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHN 376
Y+ ++C+ + G+C YG C F+H+
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHD 261
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 37.9 bits (84), Expect = 0.005
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAH 259
Y+ ++C+ ++E G C YGD C+F H
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLH 260
Score = 33.9 bits (74), Expect = 0.083
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHN 376
Y+ ++C+ + G+C YG C F+H+
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHD 261
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 361
Y C F + G C+ GD C+F+HGV E HP +Y+T+ C+ G C
Sbjct: 131 YSGTACPEFRK-GSCRRGDSCEFSHGVFE---CWLHPSRYRTQPCKD----GTSCRRRIC 182
Query: 362 HFVHNAEEAR 391
F H E+ R
Sbjct: 183 FFAHTTEQLR 192
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 37.9 bits (84), Expect = 0.005
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAH 259
Y+ ++C+ ++E G C YGD C+F H
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLH 225
Score = 33.9 bits (74), Expect = 0.083
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHN 376
Y+ ++C+ + G+C YG C F+H+
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHD 226
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRC 361
Y C F + G C GD C++AHG+ E HP +Y+T LC+ + C C
Sbjct: 250 YSCVPCPEFRK-GSCSRGDTCEYAHGIFE---CWLHPAQYRTRLCKDETN---CSRRV-C 301
Query: 362 HFVHNAEEAR 391
F H EE R
Sbjct: 302 FFAHKPEELR 311
>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 397
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH-----GV--RELRNLQRHPKYKTEL-CRTFHSVGFCPYGP 355
C + + G CK+G C+F H G+ R N+ +P E+ C F G C +G
Sbjct: 91 CEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGG 150
Query: 356 RCHFVH 373
C F H
Sbjct: 151 TCKFNH 156
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH-GVREL--RNLQRHPKYKTEL----CRTFHSVGFCPYGPR 358
C + G+C++G C+F H REL + +Y + C + G C +G
Sbjct: 46 CSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRGEYPERIGQPECEYYLKTGTCKFGVT 105
Query: 359 CHFVHNAEEA 388
C F H +A
Sbjct: 106 CKFHHPRNKA 115
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGP 355
C+ + + G CK+G C+F H L ++ + LC + G C +GP
Sbjct: 280 CQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGP 339
Query: 356 RCHFVH 373
C F H
Sbjct: 340 SCKFDH 345
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVR 268
LC + G+CK+G C+F H +R
Sbjct: 325 LCVFYTRYGICKFGPSCKFDHPMR 348
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 35.9 bits (79), Expect = 0.021
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHN 376
C F + G C GD C++AHGV E HP +Y+T LC+ G C C F H
Sbjct: 260 CPEFRK-GSCPKGDSCEYAHGVFE---SWLHPAQYRTRLCK--DETG-CARRV-CFFAHR 311
Query: 377 AEEAR 391
+E R
Sbjct: 312 RDELR 316
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVR-------ELRNLQRHPKYKTELCRTFHSVGFCPYGPR 358
C+ F G CK+G C+F H + L ++ + C F G C +GP
Sbjct: 297 CQYFMRTGDCKFGTSCRFHHPMEAASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPA 356
Query: 359 CHFVHN 376
C F H+
Sbjct: 357 CKFDHS 362
Score = 31.1 bits (67), Expect = 0.58
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRE---LRNLQRH-----PKYKTELCRTFHSVGFCPYGP 355
C + GVC YG +C+F H L L+ + +C+ F G C +G
Sbjct: 48 CIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGA 107
Query: 356 RCHFVH 373
C + H
Sbjct: 108 SCKYHH 113
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGV 265
C F + G+CK+G C+F H +
Sbjct: 342 CTHFAQHGICKFGPACKFDHSL 363
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAH--------GVRELR-NLQRHPKYKTEL-CRTFHSVGFCP 346
+C+ F G CK+G C++ H V + N P E C F G C
Sbjct: 93 VCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCK 152
Query: 347 YGPRCHFVH 373
+G C + H
Sbjct: 153 FGSTCRYHH 161
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP-----KYKTELCRTFHSVGFCPYGPRCH 364
C+ + + G CK+G C+F H R+ Q P LC + G C +GP C
Sbjct: 249 CQFYMKTGDCKFGTVCKFHHP----RDRQTPPPDCVLSSGEPLCVFYSRYGICKFGPSCK 304
Query: 365 FVH 373
F H
Sbjct: 305 FDH 307
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELR-------NLQRHPKYKTEL-CRTFHSVGFCPYGP 355
C + + G CK+G C+F H + N+ +P E C F +G C +G
Sbjct: 93 CEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGG 152
Query: 356 RCHFVH 373
C F H
Sbjct: 153 TCKFNH 158
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPR 358
C + G+C++G C+F H + R +P + C + G C +G
Sbjct: 48 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 107
Query: 359 CHFVHNAEEA 388
C F H +A
Sbjct: 108 CKFHHPRNKA 117
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVR 268
LC + G+CK+G C+F H +R
Sbjct: 287 LCVFYSRYGICKFGPSCKFDHPMR 310
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNL 283
C F G CK+G C+F H + NL
Sbjct: 139 CSYFLRIGQCKFGGTCKFNHPQTQSTNL 166
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Frame = +2
Query: 194 ELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL----------CRTFHSVGFC 343
E C + G CK+G C+F H + + R K + + C+ + G C
Sbjct: 114 EDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGC 173
Query: 344 PYGPRCHFVH 373
YG C F H
Sbjct: 174 KYGETCRFNH 183
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVREL-------RNLQRHPKYKTEL-CRTFHSVGFCPYGP 355
C+ + G CKYG+ C+F H + + N P E+ C + G C YG
Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGA 223
Query: 356 RCHFVH 373
C F H
Sbjct: 224 ECKFNH 229
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP--------KYKTELCRTFHSVGFCPYGP 355
C + + G CK+ C++ H L L + + +C + G C +GP
Sbjct: 352 CSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGP 411
Query: 356 RCHFVHNAE 382
C F H+ +
Sbjct: 412 ACRFDHSVQ 420
Score = 30.3 bits (65), Expect = 1.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVR 268
+C + G+CK+G C+F H V+
Sbjct: 397 ICTYYSRYGICKFGPACRFDHSVQ 420
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGP 355
C+ F G CK+G C++ H V L ++ + C F G C +GP
Sbjct: 288 CQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGP 347
Query: 356 RCHFVHN 376
C F H+
Sbjct: 348 ACKFDHS 354
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH---------GVR-ELRNLQRHPKYKTELCRTFHSVGFCPY 349
C + GVC YG +C+F H GVR E L + +C+ F G C +
Sbjct: 35 CIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGH--PVCQHFMRTGTCKF 92
Query: 350 GPRCHFVH 373
G C + H
Sbjct: 93 GASCKYHH 100
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGV 265
C F + G+CK+G C+F H +
Sbjct: 334 CTHFAQHGICKFGPACKFDHSM 355
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAH 259
+C+ F G CK+G C++ H
Sbjct: 80 VCQHFMRTGTCKFGASCKYHH 100
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +2
Query: 227 CKYGDKCQFAHGVRE----LRNLQRHPKYKTE-LCRTFHSVGFCPYGPRCHFVH 373
CKYG KC+F H E + P+ +E +C + G C +G C F H
Sbjct: 240 CKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHH 293
Score = 33.9 bits (74), Expect = 0.083
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVREL----RNLQRHPKYKTEL-----------CRTFHSV 334
C + + G CK+G++C+F H L + + P K L C +
Sbjct: 426 CDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKT 485
Query: 335 GFCPYGPRCHFVH 373
G C YG C F H
Sbjct: 486 GTCKYGATCKFDH 498
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH-------GVRELRNL-----QRHPKYKTEL-CRTFHSVGF 340
C + + CK+G+ C+F H G+ + + + +P+ E C +
Sbjct: 180 CTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDCPYYIKTQR 239
Query: 341 CPYGPRCHFVHNAEEA 388
C YG +C F H EEA
Sbjct: 240 CKYGSKCKFNHPREEA 255
>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 593
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 308 ELCRTFHSVGFCPYGPRCHFVHNAE 382
+LC F G CP G CHF HNAE
Sbjct: 304 KLCFKFVCSGSCPRGEDCHFQHNAE 328
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 194 ELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
+LC F +G C G+ C F H N + + + +C G C GP C + H
Sbjct: 304 KLCFKFVCSGSCPRGEDCHFQH------NAEAREQCRRGVCLDLIIKGKCEKGPECSYKH 357
Query: 374 NAEE 385
++
Sbjct: 358 EFQD 361
>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 404
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 308 ELCRTFHSVGFCPYGPRCHFVHNAE 382
+LC F G CP G CHF HNAE
Sbjct: 115 KLCFKFVCSGSCPRGEDCHFQHNAE 139
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 194 ELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
+LC F +G C G+ C F H N + + + +C G C GP C + H
Sbjct: 115 KLCFKFVCSGSCPRGEDCHFQH------NAEAREQCRRGVCLDLIIKGKCEKGPECSYKH 168
Query: 374 NAEE 385
++
Sbjct: 169 EFQD 172
>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 468
Score = 34.3 bits (75), Expect = 0.063
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPR 358
C + GVC YG++C++ H +R ++P ++ C+ + G C +G
Sbjct: 51 CAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGAS 110
Query: 359 CHFVH 373
C F H
Sbjct: 111 CKFHH 115
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH---GVRELRNLQRHP-----KYKTELCRTFHSVGFCPYGP 355
C+ + + G CK+G C+F H V N P + + C + GFC +G
Sbjct: 295 CQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGS 354
Query: 356 RCHFVH 373
C F H
Sbjct: 355 TCKFDH 360
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP--------KYKTELCRTFHSVGFCPYGP 355
C+ + + G CK+G C+F H ++ P + C + G C +G
Sbjct: 96 CQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGI 155
Query: 356 RCHFVH 373
C F H
Sbjct: 156 TCKFHH 161
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELR 277
C + + G CK+G C+F H + +R
Sbjct: 341 CTFYVQNGFCKFGSTCKFDHPMGTIR 366
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVREL 274
CR FEE G C GD C HG+ +
Sbjct: 206 CRDFEERGFCLRGDMCPMEHGMNRI 230
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVREL 274
CR FEE G C GD C HG+ +
Sbjct: 206 CRDFEERGFCLRGDMCPMEHGMNRI 230
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.14
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNL------QRHPKYKTE-------LCRTFHSVG 337
+CR F+ G C GD C+F+H + N R K+ + +CR F G
Sbjct: 135 VCRAFQR-GECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVCRAFQR-G 192
Query: 338 FCPYGPRCHFVHNAEEA 388
C G C F H+ + A
Sbjct: 193 ECTRGDSCKFSHDEKRA 209
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELR 277
YKT+LC F + G C C FAHG ELR
Sbjct: 7 YKTKLCILFNKTGDCS-RPNCTFAHGNAELR 36
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 394
YKT+LC F+ G C P C F H E RR
Sbjct: 7 YKTKLCILFNKTGDCS-RPNCTFAHGNAELRR 37
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAH 259
+ ELCR F+ G C+YG+ C+F H
Sbjct: 2 RKELCRNFQR-GSCRYGENCRFLH 24
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 302 KTELCRTFHSVGFCPYGPRCHFVH 373
+ ELCR F G C YG C F+H
Sbjct: 2 RKELCRNFQR-GSCRYGENCRFLH 24
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
LC+ F G C G+ C+F+H ++ N +C TF+ C YG RC + H
Sbjct: 6 LCKFFVH-GSCLKGENCEFSHDSKDPPN---------NVC-TFYQKRICLYGSRCRYDH 53
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
LC+ F G C G+ C+F+H ++ N +C TF+ C YG RC + H
Sbjct: 6 LCKFFVH-GSCLKGENCEFSHDSKDPPN---------NVC-TFYQKRICLYGSRCRYDH 53
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELR-------NLQRHPKYKTEL-CRTFHSVGFCPYGP 355
C + + G CK+G C+F H + N+ +P E C F +G C +G
Sbjct: 72 CEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGG 131
Query: 356 RCHFVH 373
C F H
Sbjct: 132 TCKFNH 137
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGP 355
C+ + + G CK+G C+F H L ++ + LC + G C +GP
Sbjct: 228 CQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGP 287
Query: 356 RCHFVH 373
C F H
Sbjct: 288 SCKFDH 293
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPR 358
C + G+C++G C+F H + R +P + C + G C +G
Sbjct: 27 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 86
Query: 359 CHFVHNAEEA 388
C F H +A
Sbjct: 87 CKFHHPRNKA 96
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVR 268
LC + G+CK+G C+F H +R
Sbjct: 273 LCVFYSRYGICKFGPSCKFDHPMR 296
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNL 283
C F G CK+G C+F H + NL
Sbjct: 118 CSYFLRIGQCKFGGTCKFNHPQTQSTNL 145
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELR-------NLQRHPKYKTEL-CRTFHSVGFCPYGP 355
C + + G CK+G C+F H + N+ +P E C F +G C +G
Sbjct: 93 CEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGG 152
Query: 356 RCHFVH 373
C F H
Sbjct: 153 TCKFNH 158
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGP 355
C+ + + G CK+G C+F H L ++ + LC + G C +GP
Sbjct: 249 CQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGP 308
Query: 356 RCHFVH 373
C F H
Sbjct: 309 SCKFDH 314
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPR 358
C + G+C++G C+F H + R +P + C + G C +G
Sbjct: 48 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 107
Query: 359 CHFVHNAEEA 388
C F H +A
Sbjct: 108 CKFHHPRNKA 117
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVR 268
LC + G+CK+G C+F H +R
Sbjct: 294 LCVFYSRYGICKFGPSCKFDHPMR 317
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNL 283
C F G CK+G C+F H + NL
Sbjct: 139 CSYFLRIGQCKFGGTCKFNHPQTQSTNL 166
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 212 EEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 370
E+ C+Y DKC+F H + E Q+ + + C S C YG C F+
Sbjct: 116 EDVDSCQYKDKCRFNHDI-EAFKAQKADDIEGQ-CPFVASGMKCAYGLSCRFL 166
>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, muscle
(Swiss-Prot:P05661) [Drosophila melanogaster]
Length = 468
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 354 RVAISCITQRKQDAENHRRQEVHWHRSHRADLWRRI*AT 470
R+ + +R D E+H R +H H RA L R+I AT
Sbjct: 73 RIELRRCRRRDSDVESHSRSPLHDHPPSRASLRRQIAAT 111
>At5g08200.1 68418.m00959 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 409
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 476 RSPRSPHSPLTPYSSPAMSPPAQATAFAFRRTNSPD 583
R P S + SP SPP +++ F +NSPD
Sbjct: 39 REKSPPRSKILRIPSPTSSPPPSSSSPPFHGSNSPD 74
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAH 259
KTE F G C YGDKC++ H
Sbjct: 103 KTEKLCKFWVDGNCPYGDKCRYLH 126
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 302 KTELCRTFHSVGFCPYGPRCHFVH 373
KTE F G CPYG +C ++H
Sbjct: 103 KTEKLCKFWVDGNCPYGDKCRYLH 126
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 263 VRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
+R R P++ ++C F+ GFC +G C + H
Sbjct: 145 LRTSRRSPSLPEFPVKICHYFNK-GFCKHGNNCRYFH 180
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHG 262
+ ++C F + G CK+G+ C++ HG
Sbjct: 157 FPVKICHYFNK-GFCKHGNNCRYFHG 181
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 17/80 (21%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGV-----------------RELRNLQRHPKYKTEL 313
++ +CR + G+C GD C F H RE + +H +
Sbjct: 61 FRQTVCRHWLR-GLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNEDIKE 119
Query: 314 CRTFHSVGFCPYGPRCHFVH 373
C + +GFCP GP C + H
Sbjct: 120 CNMY-KLGFCPNGPDCRYRH 138
>At5g57790.1 68418.m08529 expressed protein
Length = 205
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 135 SNAPPVNRLLRHQPQVATRPSSADRLKKRGFVNMGI 242
SN PP+ + P ++PS+ D + GF ++GI
Sbjct: 43 SNFPPLTTEIDTPPPSNSKPSTVDDISMEGFESLGI 78
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAH 259
KTE F G C YGDKC++ H
Sbjct: 110 KTEKVCNFWVDGNCTYGDKCRYLH 133
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 227 CKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
C GD C F H +L ++P C F + GFC G C F H
Sbjct: 393 CMKGDDCPFDH------DLSKYP------CNNFITKGFCYRGDSCLFSH 429
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAH 259
K +C F + G CK G+KCQF H
Sbjct: 147 KKSVCN-FWKDGNCKKGEKCQFLH 169
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +2
Query: 200 CRP--FEEAGVCKYGDKCQFAHG 262
C+P + G+CK G+ C+F HG
Sbjct: 132 CKPCVYFSRGLCKNGESCKFIHG 154
>At4g34350.1 68417.m04881 LytB family protein contains Pfam profile:
PF02401 LytB protein
Length = 466
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 588 SGSGEFVRRKAKAVACAGGD 529
SGSG RRKA +V C+ GD
Sbjct: 24 SGSGSLRRRKALSVRCSSGD 43
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 488 SPHSPLTPYSSPAMSPPA 541
S + PLTP+++P+M PPA
Sbjct: 245 SGNPPLTPFTAPSMPPPA 262
>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 371
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQR 289
K+ LC F +AG C+ G KC+F+H + N+QR
Sbjct: 90 KSILCE-FFKAGQCQKGFKCKFSHDL----NIQR 118
>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 145
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 476 RSPRSPHSPLTPYSSPAMSPPAQ 544
R P+ P P P SSP SPP Q
Sbjct: 60 REPQKPVPPSQPSSSPPPSPPPQ 82
>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 172
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 476 RSPRSPHSPLTPYSSPAMSPPAQ 544
R P+ P P P SSP SPP Q
Sbjct: 60 REPQKPVPPSQPSSSPPPSPPPQ 82
>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
protein predicted proteins, Arabidopsis thaliana
Length = 381
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 293 PKYKTELCRTFHSVGFCPYGPRCH 364
P++ ++C F+ GFC +G CH
Sbjct: 163 PEFPLKICHYFNK-GFCKHGNNCH 185
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 479 SPRSPHSPLTPYSSPAMSPPAQATAFAFRRTNSPDP 586
+P H P P SP + P + FRR+ P P
Sbjct: 462 TPSPVHKPQPPKESPQPNDPYDQSPVKFRRSPPPPP 497
>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
kinase, putative contains protein kinase domains
Length = 890
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 271 TTQSSASS*IQDGAVSHFPFGWLLSLWTALPFRA*RRGSKTQRTIVARRFIGIALIGRIY 450
TT + AS+ +G V+ FG L+ +LP + + T+ + IGI IG +Y
Sbjct: 559 TTPTQASTESGNGGVT---FGKLVLFSKSLPSKYEDWEAGTKALLDKDNIIGIGSIGAVY 615
Query: 451 GVVYERRVAIA 483
+E V+IA
Sbjct: 616 RASFEGGVSIA 626
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 275 RNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 385
R + K + ++C +F+++G C G C F H E
Sbjct: 147 RRTPSYEKNRPKIC-SFYTIGQCKRGAECSFRHEMPE 182
>At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to vegetative cell wall
protein gp1 [Chlamydomonas reinhardtii]
gi|12018147|gb|AAG45420
Length = 175
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 482 PRSPHSPL-TPYSSPAMSPPAQATAFAFRRTNSPDPEDD 595
P + HSP +P +SP++SPP + + + SP P +
Sbjct: 66 PETEHSPSPSPANSPSVSPPLPNDSQSPSSSASPSPSPE 104
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 339 SVLMDRVA-ISCITQRKQDAENHRRQ 413
SVLMD V + C+T + D E HR +
Sbjct: 418 SVLMDHVGPVKCLTAVEDDGEGHREK 443
>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 704
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 234 MGINANLLTASANYAIFSVIL--NTRRSCVALSIRLASVLMDRVAISCITQRKQDAENHR 407
M + + S Y IFS+++ NT+R + A V++ + +KQ+ + H+
Sbjct: 94 MALEPEPIFMSLIYQIFSLVISMNTKRDKLISLCPQACVVLGNNGNFEVIVKKQEGQAHK 153
Query: 408 RQEVHWHRSHR 440
+ + W R +
Sbjct: 154 GKAIPWSRDSK 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,338,335
Number of Sequences: 28952
Number of extensions: 236555
Number of successful extensions: 1122
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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