Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0595
         (422 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   2.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   2.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   2.8  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   3.7  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 88  LGEGGHHATHQLSAHETRGTGAEEDQTQNQEQDLSSGL 201
           LG  G  +   + + E  GTG E+D T  ++     G+
Sbjct: 149 LGSPGDASNASIGSGE--GTGEEDDDTNGKKNQKKRGI 184


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 88  LGEGGHHATHQLSAHETRGTGAEEDQTQNQEQDLSSGL 201
           LG  G  +   + + E  GTG E+D T  ++     G+
Sbjct: 305 LGSPGDASNASIGSGE--GTGEEDDDTNGKKNQKKRGI 340


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 106 HATHQLSAHETRGT 147
           H  H  ++H TRGT
Sbjct: 279 HTRHTTTSHNTRGT 292


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   DDDDHKETQVSDGRNGYPR 58
           DDDD  +  +S+  N  PR
Sbjct: 288 DDDDDDDDDMSNSENQNPR 306


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,185
Number of Sequences: 336
Number of extensions: 1225
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)