Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0595
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    31   0.074
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   0.91 
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   2.1  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    24   8.5  
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom...    24   8.5  

>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 209

 Score = 31.1 bits (67), Expect = 0.074
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +2

Query: 188 SAQDSRKRKKEYVDGLEDRVKQCTAENQTLIR 283
           +AQ  R +KK+Y+  L+D+V   T+EN+ L++
Sbjct: 134 AAQKCRIKKKKYLQTLQDQVNYYTSENKELLQ 165


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 383 TCSYCYHSHPLIRSVNVSTEHSATGSVT 300
           +C    H H L +++ V+  H  TGS+T
Sbjct: 467 SCLILIHRHSLTKNLQVNCVHRGTGSIT 494


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 88  LGEGG--HHATHQLSAHETRGTGAEEDQTQNQEQDLSSGLEETQE 216
           LG+GG  H AT    A  +   GA E+  Q  ++DL     ET E
Sbjct: 333 LGQGGVTHEATTSARASASGIPGAFEEVQQTVQEDLPHPTAETVE 377


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 283 EDKNTAVTEPVAECSVETFTERIKGCE 363
           E +  A    + E S+  FTE I  CE
Sbjct: 264 EKRRIAAQRKLEEASIPAFTEEILACE 290


>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 238

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 371 CYHSHPLIRSVNVSTEHSATGSVTAVFLSS 282
           CY  HPL+ ++  +     TG + A  L++
Sbjct: 77  CYSDHPLVTTLRETYRKPCTGIMQASILTA 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,956
Number of Sequences: 5004
Number of extensions: 22506
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)