Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0595
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   10.0 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   10.0 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   10.0 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   10.0 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   10.0 

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 324 ALSDWFCDCSIFILLINVWFSAVH 253
           A+  W   CS+F+ L  + F+ V+
Sbjct: 275 AIDVWMSSCSVFVFLSLMEFAVVN 298


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 312 WFCDCSIFILLINVWFSAVH 253
           WF  C+IF+    V F+ V+
Sbjct: 297 WFLGCTIFLFAAMVEFAFVN 316


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 300 CSIFILLINVWFSAVHCFTLSSSPST 223
           C+I+ L +NV F     F +++  S+
Sbjct: 5   CNIWTLAVNVLFVNSFLFVIAAQDSS 30


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 300 CSIFILLINVWFSAVHCFTLSSSPST 223
           C+I+ L +NV F     F +++  S+
Sbjct: 5   CNIWTLAVNVLFVNSFLFVIAAQDSS 30


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 300 CSIFILLINVWFSAVHCFTLSSSPST 223
           C+I+ L +NV F     F +++  S+
Sbjct: 5   CNIWTLAVNVLFVNSFLFVIAAQDSS 30


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 136 TRGTGAEEDQTQNQEQ 183
           T  TGA + Q Q Q+Q
Sbjct: 788 TTTTGARQQQQQQQQQ 803


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +1

Query: 115 HQLSAHETRGTGAEEDQTQNQEQDLSSGLEETQE 216
           H  S H      A+  Q Q Q+Q      ++ Q+
Sbjct: 816 HHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQ 849


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,979
Number of Sequences: 438
Number of extensions: 1470
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)