Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0594
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    29   0.63 
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   1.9  

>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +3

Query: 471 PPSNGSSGD----SHDYGAFDFKRKDFFGQRKQREFIPDSKKDDGYWDRR 608
           PP N   G      H +  F+  R DF+  ++  E++   +   G+W  R
Sbjct: 315 PPLNRIDGQIYNLCHFWSNFEIARLDFYNSKEYNEYVDALENAGGFWTER 364


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 600 DRRRRNNEAAKRSREKRRFNDMVLEQRVVE 689
           D+RRRN  A+ R R K++  +  LE+   E
Sbjct: 269 DKRRRNTAASARFRIKKKLKEQQLERTAKE 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,122
Number of Sequences: 5004
Number of extensions: 40655
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)