Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0594
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    34   0.12 
10_08_0330 - 16816497-16819952                                         30   1.5  
05_03_0478 - 14526180-14526578                                         30   2.0  
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840...    29   3.5  
12_02_0450 + 19172812-19172920,19173020-19173088,19173168-191732...    28   6.1  
11_06_0463 + 23879587-23879771,23879783-23881658                       28   6.1  
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79...    28   6.1  
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84...    28   6.1  
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612...    28   8.0  
09_01_0019 + 403078-404211                                             28   8.0  
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350...    28   8.0  
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184...    28   8.0  
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848     28   8.0  

>12_01_0906 +
           8799284-8799441,8800865-8801690,8801933-8802055,
           8802144-8802210,8802611-8802714,8802798-8802900,
           8803103-8803401,8804009-8804263,8805471-8805776,
           8805866-8806194,8806829-8806916,8807027-8807164,
           8807438-8807458
          Length = 938

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 546 QRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKRR 653
           +R+ R   P S+  DG   RR R +E+++R R++RR
Sbjct: 135 RRRHRRRSPSSESSDGGRSRRHRRDESSRRQRDERR 170


>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 173  GQDHSFKI*KCQISLPLFTSRKNINVNSLSQCCYDEISNANGVALFQL 30
            G++  F+I    I + L T   +++ NSLSQC  DE+ N  G+    L
Sbjct: 938  GKEQIFEIKTYAIDIQLVTGI-SLSGNSLSQCIPDELMNLQGLQFLNL 984


>05_03_0478 - 14526180-14526578
          Length = 132

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 549 RKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKR 650
           R+QR    D ++ DGY   RRR  E  +R R +R
Sbjct: 57  RRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRR 90


>01_01_1067 +
           8403584-8404195,8404532-8404693,8404837-8405346,
           8405434-8405493,8405721-8406137,8406576-8407100
          Length = 761

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 473 RGLVHREMRRDGETSARWWRSAGLHWGGP*GCTGPCAQQ--LLLAQDELGNHVSADCDWS 300
           R +V +E+RR  ET    WR   L W  P G  G  A    LL A  E G   +      
Sbjct: 679 RAVVRKEVRRHRETRRGRWRRLLLWW--PLGAHGALAGAGVLLDAAVEGGRETARQARAH 736

Query: 299 ARILTVV 279
           AR+L V+
Sbjct: 737 ARLLVVL 743


>12_02_0450 +
           19172812-19172920,19173020-19173088,19173168-19173274,
           19173874-19174365
          Length = 258

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 477 SNGSSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKKDD 590
           S G +G S   G F     D FG RK  E + D  KDD
Sbjct: 211 SFGDAGGSTGGGDFSGAGGDSFGSRKNDELMDDLFKDD 248


>11_06_0463 + 23879587-23879771,23879783-23881658
          Length = 686

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 341 PEPATAAERRGRCSPRARPS 400
           PEP TAAE+ G  SP   PS
Sbjct: 305 PEPPTAAEKSGDASPSLSPS 324


>09_01_0043 +
           790859-790873,791410-791603,792521-792605,792719-793075
          Length = 216

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 476 RRGLVHREMRRDGETSARWWRSAGLHWGGP*GCTGP 369
           + G V     +DG    R  R  G+  GGP G TGP
Sbjct: 123 KAGCVGSRADQDGRLDGREVRDGGISSGGPRGNTGP 158


>02_01_0112 -
           839048-839552,839638-839720,839828-839982,840078-840557,
           840855-841097,841189-841403,841489-841756,842477-842525
          Length = 665

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 486 SSGDSHDYGA-FDFKRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKRS 638
           ++GD+H  G  FD +  ++F +  ++++  D  KD+    + RR  E AKR+
Sbjct: 251 TNGDTHLGGEDFDQRIMEYFIKLIKKKYSKDISKDNRALGKLRREAERAKRA 302


>12_02_0333 +
           17660454-17660502,17660587-17660704,17661181-17661255,
           17661341-17661412,17661606-17661643,17661758-17661791,
           17662396-17662519,17663334-17663417,17663991-17664056,
           17664110-17664316
          Length = 288

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 470 GLVHREMRRDGETSARWWRSAGLHWGGP*GC 378
           GL H   +R    S  +W   G +W  P GC
Sbjct: 152 GLEHALGKRTTADSGEFWHVEGFYWRNPVGC 182


>09_01_0019 + 403078-404211
          Length = 377

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +3

Query: 477 SNGSSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKR 650
           S+G SG      A D KR      R++R    +S   DG      R+ + AKRS+EKR
Sbjct: 323 SDGDSGSGASDSADDRKRSS----RRRRHRKSESSGSDG----DERHGQGAKRSKEKR 372


>05_01_0442 -
           3500849-3500866,3500950-3501027,3501260-3501352,
           3501419-3501536,3502815-3502945,3503027-3503299,
           3504825-3504882,3505065-3505388,3507404-3507852,
           3509514-3509554,3510263-3510412,3510519-3510906
          Length = 706

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 470 GLVHREMRRDGETSARWWRSAGLHWGGP*GCTGP 369
           G V     +DG    R  R  G+  GGP G TGP
Sbjct: 220 GCVGSRADQDGRIGGREVRDGGISSGGPKGNTGP 253


>01_06_1731 +
           39516897-39517632,39517744-39517912,39517985-39518488,
           39518619-39518747,39519849-39519990,39520082-39520453
          Length = 683

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 314 PPKHGCRVHPEPATAAERRGRCSPRARPSAD 406
           PP  G  V P PAT A + G C P A    D
Sbjct: 63  PPPVGLPVPPLPATMAPQPGYCVPAAATVVD 93


>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
          Length = 345

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 534 DFFGQRKQREFIPDSKK-DDGYWDRRRRNNEAAKRSREKR 650
           D +   ++  ++PDS+    G+W  +RRNNE+++R+   R
Sbjct: 257 DSWDNHRENCYVPDSQGWSYGHW--KRRNNESSRRNSRGR 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,670,960
Number of Sequences: 37544
Number of extensions: 304447
Number of successful extensions: 1107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)