Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0594
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11657| Best HMM Match : bZIP_2 (HMM E-Value=3e-16) 54 8e-08
SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13) 48 9e-06
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_13456| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_37383| Best HMM Match : bZIP_2 (HMM E-Value=2.5e-06) 34 0.094
SB_19296| Best HMM Match : bZIP_2 (HMM E-Value=1.1e-08) 33 0.17
SB_38317| Best HMM Match : bZIP_2 (HMM E-Value=5.1e-14) 33 0.17
SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_11462| Best HMM Match : UBA (HMM E-Value=1.3) 30 2.0
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 29 2.7
SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10) 29 3.6
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_11657| Best HMM Match : bZIP_2 (HMM E-Value=3e-16)
Length = 298
Score = 54.4 bits (125), Expect = 8e-08
Identities = 21/46 (45%), Positives = 34/46 (73%)
Frame = +3
Query: 543 GQRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKRRFNDMVLEQR 680
G++ +R+F+PD +KDD YW RR +NN AA+RSR+ RR ++ + +
Sbjct: 154 GKKARRKFVPDQEKDDRYWARRVKNNVAARRSRDMRRQKEIEISMK 199
>SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13)
Length = 244
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3
Query: 549 RKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKRRFNDMVLEQR 680
++QR +P KD YW+RR NN AAKRSR+ +R +M + +R
Sbjct: 166 KRQRTSVPGEMKDQKYWERRFENNVAAKRSRDLKRPKEMTVAKR 209
>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +3
Query: 543 GQRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKRRFNDMVLEQR 680
G+R ++ F ++ KD+ YW++R+RNN +AKRSR+ RR ++ + R
Sbjct: 145 GKRTEKHF--NNNKDNKYWEKRQRNNASAKRSRDARRVRELECQIR 188
>SB_13456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Frame = +3
Query: 444 SPHFPMDQAPPS-NGSSGDSHDYGA-FDFKRKDFFGQRK-----QREFIPDSKKDDGYWD 602
SP ++ +P S N S DS D + + + +D K ++ + + KD+ YW
Sbjct: 199 SPKSLINLSPRSQNSQSNDSTDSTSPKESEAEDISSNAKTKLSMRKNTVSNKDKDESYWK 258
Query: 603 RRRRNNEAAKRSREKRRFNDMVLEQRV 683
RR RNN++AK+SR+ +R + + R+
Sbjct: 259 RRIRNNKSAKKSRDAKRAKEEFVAWRI 285
>SB_37383| Best HMM Match : bZIP_2 (HMM E-Value=2.5e-06)
Length = 222
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 600 DRRRRNNEAAKRSREKRRFNDMVL 671
++RR+NNEA+KR+REKRR + L
Sbjct: 159 EKRRKNNEASKRTREKRRNKEQEL 182
>SB_19296| Best HMM Match : bZIP_2 (HMM E-Value=1.1e-08)
Length = 216
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 582 KDDGYWDRRRRNNEAAKRSREKRRFNDMVLEQRVV 686
KD Y ++R +NN AAKRSRE +R ++ Q+ +
Sbjct: 170 KDQKYIEKRMKNNLAAKRSREAKRQREIEAMQKTL 204
>SB_38317| Best HMM Match : bZIP_2 (HMM E-Value=5.1e-14)
Length = 561
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 582 KDDGYWDRRRRNNEAAKRSREKRRFNDM 665
K + Y ++RR+NN +AKRSRE R+ ++
Sbjct: 287 KTEQYREKRRKNNASAKRSREARKMREI 314
>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 582 KDDGYWDRRRRNNEAAKRSREKRRFNDMVLEQRVV 686
KD Y ++R +NN AAKRSRE +R ++ Q+ +
Sbjct: 51 KDQKYIEKRMKNNLAAKRSREAKRQREIEAMQKTL 85
>SB_11462| Best HMM Match : UBA (HMM E-Value=1.3)
Length = 462
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 355 CCWLRMNSATMFRRTVTGPHESSLWLKIFAVFENSFAGII 236
C W+ + F + +E SLW++ F V N+F I+
Sbjct: 80 CAWVLPRPQSWFDSALMNSYEDSLWMEKFHVSRNTFMYIL 119
>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 917
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 519 DFKRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKR 650
D +R ++ + ++R + D +DD Y+D RR + R R R
Sbjct: 439 DLERDSYYRESRRRSYFRD--RDDAYYDDRREDEPRRSRYRNFR 480
>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
Length = 496
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 603 RRRRNNEAAKRSREKRRFNDMVLEQRVVE 689
RR+RN +AA R REKRR L++ E
Sbjct: 293 RRQRNKQAASRCREKRRQRLEELQREATE 321
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 525 KRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKRRFNDMVLE 674
KR DF RK++ + S D R+RR + K RE R N L+
Sbjct: 1126 KRSDFKNWRKKKHWKKYSSDVDALM-RKRRRKQDKKYQRELERLNQWALQ 1174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,234
Number of Sequences: 59808
Number of extensions: 329479
Number of successful extensions: 1179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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