Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0594
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   0.51 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.68 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.3  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   6.3  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   6.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   8.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   8.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 495 DSHDYGAFDFKRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKRRFNDMVLE 674
           +  +Y  +    K+ F  R++RE   +SK      ++   NN   K   +K  +N + +E
Sbjct: 285 NEREYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKLYYNIINIE 344

Query: 675 Q 677
           Q
Sbjct: 345 Q 345


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 213 FDNSTAIWIIPAKEFSNTANIFNHSEDSCGPVTVRR 320
           + + T +W+   K F+    IF HS D+ G   + R
Sbjct: 151 YSHQTDVWVELLKHFNYMKVIFIHSSDTDGRALLGR 186


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 310 VTGPHESSLWLKIFAVFENS 251
           +T P E  +W+  FA+  +S
Sbjct: 388 ITIPKEMKIWIPAFAIHRDS 407


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 594 YWDRRRRNNEAAKRSREKRRF 656
           +W +RR      K  R+KR+F
Sbjct: 7   HWHKRRATGGKRKPIRKKRKF 27


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 549 RKQREFIPDSKKDDGYWDRRRRNNEAAKR 635
           + + E  P ++KD GY++ +  N  A  R
Sbjct: 82  KSKMEIDPATQKDAGYYECQADNQYAVDR 110


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 618 CCASCGPSSRRPFCC 574
           C   CGP+   PF C
Sbjct: 45  CLPFCGPNVINPFFC 59


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 618 CCASCGPSSRRPFCC 574
           C   CGP+   PF C
Sbjct: 44  CLPFCGPNVINPFFC 58


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 329 CRVHPEPATAA 361
           CR+H  PAT A
Sbjct: 442 CRIHGSPATTA 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,643
Number of Sequences: 438
Number of extensions: 3227
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)