Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0589
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   1.1  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   1.9  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   3.4  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    26   3.4  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   5.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   5.9  

>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 51  TNRRTVLTGVIHQGNNGVMPQGTVPTAS 134
           TN++  +TG    G NG  P  T PT S
Sbjct: 522 TNQKVSITGAAADGPNGSAPVDTTPTNS 549


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 413 RDRVHAGVTIKACLAVGIVIVLYI 342
           RDR+  G+T+ A LA+G++ +L +
Sbjct: 43  RDRLLTGMTLSAQLALGVLTILMV 66


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 296 CPFFGFFMRINGPCLFFPLW 237
           C + G F+ INGPC  +  W
Sbjct: 239 CMYRGNFVTINGPCTTYMHW 258


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 264 WSVFVLPFVDRSTTDPVLERTLSSNREALCSRITVPVSNIPRK 136
           W++F LP + ++    VLE   S  +E   S I   ++ + ++
Sbjct: 349 WAIFSLPMIQKALPKGVLEEIQSLLKEVEISEINTQLTALKKQ 391


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 429 THRKPERSCPCRCYYKSVPGRRDSYRPVHP 340
           T  +P+    C C+YK +   R  +R +HP
Sbjct: 59  TFERPDIIWSC-CHYKIIQHFRSRFREIHP 87


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 237 PQREEQTRTIDSHKETEKRACSFDTPHTS 323
           P+RE  ++   S K T  R  SFD  HTS
Sbjct: 189 PRREHSSQFQVSEKRTLVRLPSFDDVHTS 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,726
Number of Sequences: 5004
Number of extensions: 43599
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)