Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0589
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1216 - 25344638-25345159,25346011-25346511 33 0.089
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743... 30 1.1
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 29 1.4
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 29 2.5
04_04_0237 + 23831949-23832354,23833970-23835166,23835274-238354... 28 3.3
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 28 3.3
12_02_0556 + 20415683-20416841,20417563-20417726,20417837-204179... 28 4.4
08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558... 27 5.8
03_05_0231 - 22170343-22172004,22172225-22172449 27 5.8
>08_02_1216 - 25344638-25345159,25346011-25346511
Length = 340
Score = 33.5 bits (73), Expect = 0.089
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +1
Query: 184 FTVRTQSSFKNWISCAPIHKGKNKHGPLILIKKPKNGHVPSTHRTHH 324
F +S+ + W+ C HK +++ L+++K P + ++P +H HH
Sbjct: 159 FAAARRSTKEEWVICRIFHKVGDQYSKLMMMKSPASYYLPVSH--HH 203
>11_02_0020 +
7429898-7430131,7432565-7432669,7434535-7434621,
7435188-7435241,7435338-7435483,7435593-7435719,
7436200-7436208
Length = 253
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 48 RTNRRTVLTGVIHQGNNGVMPQGTVPT---ASFSEEYLKPEQLYASTMLHGSNSEFFQEL 218
R R V ++HQG + + VP A+ E KPEQL+ +L+ +N + +E+
Sbjct: 84 RPAERLVAFTILHQGYSSQLENPFVPLIIHAACDETSDKPEQLFLQLLLNSTNGDNDREI 143
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 223 SCAPIHKGKNKHGPLILIKKPKNG---HVPSTHRTHHSAYKGG 342
+C+ + ++ + KP NG H P H HHSA GG
Sbjct: 300 ACSEVSSNRDDEQIGNTVAKPANGLQQHPPPPHHHHHSAMNGG 342
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 28.7 bits (61), Expect = 2.5
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = +3
Query: 108 PQG-TVPTASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPQREEQTRTIDSHKET 284
P G T+P + QL + HG + DQ+ SD + +E R + +E
Sbjct: 532 PAGITIPRRQRGNTFRGARQLTQHLLSHGGRVSDSEGSDQVSSDDE-DESPRHL-GEEEM 589
Query: 285 EKRACS--FDTPH-TSFCLQGWDVQDDNYPYGQARFYSNTC 398
E +AC+ + H S CL ++++P G+ TC
Sbjct: 590 ESKACTRCGEIGHVASMCLTLCTHCEEDHPPGECPTRKVTC 630
>04_04_0237 +
23831949-23832354,23833970-23835166,23835274-23835453,
23835537-23835823,23835912-23836029,23836354-23836483,
23836693-23836861,23836926-23836991,23837466-23837738,
23838131-23838349
Length = 1014
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +3
Query: 105 MPQGTVPTASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPQREEQTRTIDSHKET 284
MP+ F YL + ++++ G +S+F +EL +L EEQ T +++
Sbjct: 257 MPEDLNGGVMFDHTYLVDSK-NLNSLIFGPDSQFSKELRELQGTMDYEEQPWTWNNNNPP 315
Query: 285 E-KRACSFDTPHTSFCLQGWDVQDDNYPYGQARFY 386
R C + T F +++ Y + Y
Sbjct: 316 SLTRTCQYTKGATKFMKAVKTIEEQTYLKADGKSY 350
>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Frame = +3
Query: 105 MPQGTVPTASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPQREEQTRTIDSHKE- 281
+P G++P + E T N F Q C+ P+ R H+
Sbjct: 1097 IPDGSIPNTPNATENTSETSNVEETDATNQNYAFSNL--QSCNIPEVTPMHRFSGVHQSG 1154
Query: 282 ------TEKRACSFDTPHTSFC-LQGWDVQ 350
+E RACS+ TP S+C + G D Q
Sbjct: 1155 VNCLHVSEMRACSYSTPGMSYCVISGGDDQ 1184
>12_02_0556 +
20415683-20416841,20417563-20417726,20417837-20417926,
20427889-20429145
Length = 889
Score = 27.9 bits (59), Expect = 4.4
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Frame = +3
Query: 108 PQG-TVPTASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPQREEQTRTIDSHKET 284
P G T+P + QL + HG + DQ+ SD + E R +E
Sbjct: 663 PAGITIPRRQRGNTFRGARQLTQHLLSHGGRVSDSEGSDQVSSDYEDESLRRL--GEEEM 720
Query: 285 EKRAC--SFDTPH-TSFCLQGWDVQDDNYPYGQARFYSNTC 398
E +AC + H S CL ++++P G+ TC
Sbjct: 721 ESKACPRCGEIGHIASMCLTLCTHCEEDHPPGECLTRKVTC 761
>08_01_1000 +
10154024-10154147,10155500-10155761,10155839-10155885,
10155967-10155998,10156079-10156146,10156214-10156605,
10156811-10157009,10157494-10157636,10157722-10158366,
10158493-10158551,10158725-10158823
Length = 689
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 246 PFVDRSTTDPVLERTLSSNREALCSRITVP 157
PFV ++ T P LERT+S + L S ++P
Sbjct: 259 PFVSKNITPPALERTISPGQGGL-SGTSIP 287
>03_05_0231 - 22170343-22172004,22172225-22172449
Length = 628
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 255 FVLPFVDRSTTDPVLERTLSSNREALCSRI 166
FVLP D DP+L R SS+ + + +RI
Sbjct: 6 FVLPRRDNGDGDPILSRHSSSSDDPILARI 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,646
Number of Sequences: 37544
Number of extensions: 277623
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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