BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0589 (475 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11) 30 1.1 SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 28 3.4 SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05) 28 3.4 SB_40294| Best HMM Match : RhoGEF (HMM E-Value=7.5e-08) 27 6.0 SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5) 27 6.0 SB_58656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0 SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 27 6.0 SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0 SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0 SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9 SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9 >SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11) Length = 534 Score = 29.9 bits (64), Expect = 1.1 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +3 Query: 306 DTPH-TSFCLQGWDVQD--DNYPYGQARFYSNTCMDTISPAFYGFALNN 443 D+PH L G + + +NYPY + ++ + C+D Y F ++N Sbjct: 177 DSPHIVRSALSGDESKTIFENYPYSYSHYHIDICLDYAQKRIYTFEIDN 225 >SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) Length = 796 Score = 28.3 bits (60), Expect = 3.4 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = +3 Query: 207 FQELDQLCSDPQREEQTRTIDSHKETEKRACSFDTPHTSFCLQGWDVQDDNYPYGQARFY 386 F+ L+Q S+P R+ + T D K KR C+ + + S Q + Sbjct: 493 FKALEQQQSNPPRKHKFHTQDPEKTPAKRVCTSNEKNNSAAASLVSTQGNKESLSSTEST 552 Query: 387 SNTCMDTISPA 419 S ++T+ A Sbjct: 553 SGDSLETLVSA 563 >SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05) Length = 481 Score = 28.3 bits (60), Expect = 3.4 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Frame = +1 Query: 217 WISCAPIHK-GKNKHGPLILIKKPKNGHVPSTHRTHHSA--YKGG-MYRTITIPTARHAF 384 W+S +P+H K+K+ +L K V +T + H S+ +GG M + + ++R F Sbjct: 318 WVSYSPVHNVEKSKNAITVLDTMKKIKVVGTTGQIHFSSEGERGGEMLDVMNLRSSR--F 375 Query: 385 IVTPAWTRSLRLSMGSL 435 I W S RL GSL Sbjct: 376 IKVGTW-NSTRLVSGSL 391 >SB_40294| Best HMM Match : RhoGEF (HMM E-Value=7.5e-08) Length = 389 Score = 27.5 bits (58), Expect = 6.0 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -2 Query: 273 ENQWSVFVLPFVDRSTTDPVLERTLSSNREALCSRITVP 157 +N+W ++ RST D +L+ L +A+ RI P Sbjct: 330 KNEWMAMLMTLYMRSTMDRLLDHILMEEEKAIPLRIPSP 368 >SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5) Length = 402 Score = 27.5 bits (58), Expect = 6.0 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = +3 Query: 126 TASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPQRE--EQTRTIDSHKETEKRAC 299 T S E+ L+ ++Y M G N+E++Q++ +C D ++ +QT + +E+ A Sbjct: 85 TQSDLEDLLEDIKVYLE-MDQGKNAEYWQDITIICKDEIKKLRKQTENYNDRRESIHTAV 143 Query: 300 SFD 308 D Sbjct: 144 HSD 146 >SB_58656| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 77 Score = 27.5 bits (58), Expect = 6.0 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 447 SHY*ERTHRKPERSCPCRCYYKSVPGRRDS 358 +HY TH +PE +C C Y S PG+ S Sbjct: 12 THYDTETHTQPEVTC-CHQTYVSDPGKLHS 40 >SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) Length = 652 Score = 27.5 bits (58), Expect = 6.0 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%) Frame = -1 Query: 181 IVLAYNCS---GFKYSSEKLAVGTVP 113 + L YNCS G+K +L VGT+P Sbjct: 266 LTLGYNCSCFSGYKLQGARLCVGTLP 291 >SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 708 Score = 27.5 bits (58), Expect = 6.0 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +3 Query: 84 HQGNNGVMPQGTVPTASFSEEYLKPEQLYASTMLHGSNS-EFFQELDQLCSDPQREEQ 254 H +G++ S E + QL A +H + +FF+ L + CSDP E+ Sbjct: 163 HDDFSGILLPAVQKALLRSPEVVLEWQLRAKEEIHRQQAIQFFKNLSKQCSDPAAVEE 220 >SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 398 Score = 27.5 bits (58), Expect = 6.0 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +3 Query: 168 YASTMLHGSNSEFFQELDQLCSDPQREEQTR---TIDSHKETEKRA 296 + TM S SE QEL +L DP+ +E T +ID+ K + A Sbjct: 54 HVKTMAEESMSEASQELKELKGDPESQEPTNCAISIDTGKVLDVEA 99 >SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 163 Score = 27.1 bits (57), Expect = 7.9 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = +1 Query: 295 HVPSTHRTHHSAYKGGMYRTITIPTARHAFIVTPAWTR 408 H PS+HRT H A + TI + + WT+ Sbjct: 40 HPPSSHRTVHDAPRASESATIANESTTKTHAESSGWTK 77 >SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 892 Score = 27.1 bits (57), Expect = 7.9 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -2 Query: 255 FVLPFVDRSTTDPVLERTLSSNREALCSRITVPV-SNIPRKSW 130 F+ P DR T+D +LER L N + R+ V P++ W Sbjct: 824 FLKPTYDRLTSDALLERCLPGNTQNPNERLNSLVWLRCPKQRW 866 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,536,287 Number of Sequences: 59808 Number of extensions: 349640 Number of successful extensions: 1140 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 956 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1140 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 994359969 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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