Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0589
(475 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11) 30 1.1
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 28 3.4
SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05) 28 3.4
SB_40294| Best HMM Match : RhoGEF (HMM E-Value=7.5e-08) 27 6.0
SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5) 27 6.0
SB_58656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 27 6.0
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)
Length = 534
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 306 DTPH-TSFCLQGWDVQD--DNYPYGQARFYSNTCMDTISPAFYGFALNN 443
D+PH L G + + +NYPY + ++ + C+D Y F ++N
Sbjct: 177 DSPHIVRSALSGDESKTIFENYPYSYSHYHIDICLDYAQKRIYTFEIDN 225
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +3
Query: 207 FQELDQLCSDPQREEQTRTIDSHKETEKRACSFDTPHTSFCLQGWDVQDDNYPYGQARFY 386
F+ L+Q S+P R+ + T D K KR C+ + + S Q +
Sbjct: 493 FKALEQQQSNPPRKHKFHTQDPEKTPAKRVCTSNEKNNSAAASLVSTQGNKESLSSTEST 552
Query: 387 SNTCMDTISPA 419
S ++T+ A
Sbjct: 553 SGDSLETLVSA 563
>SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05)
Length = 481
Score = 28.3 bits (60), Expect = 3.4
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 217 WISCAPIHK-GKNKHGPLILIKKPKNGHVPSTHRTHHSA--YKGG-MYRTITIPTARHAF 384
W+S +P+H K+K+ +L K V +T + H S+ +GG M + + ++R F
Sbjct: 318 WVSYSPVHNVEKSKNAITVLDTMKKIKVVGTTGQIHFSSEGERGGEMLDVMNLRSSR--F 375
Query: 385 IVTPAWTRSLRLSMGSL 435
I W S RL GSL
Sbjct: 376 IKVGTW-NSTRLVSGSL 391
>SB_40294| Best HMM Match : RhoGEF (HMM E-Value=7.5e-08)
Length = 389
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 273 ENQWSVFVLPFVDRSTTDPVLERTLSSNREALCSRITVP 157
+N+W ++ RST D +L+ L +A+ RI P
Sbjct: 330 KNEWMAMLMTLYMRSTMDRLLDHILMEEEKAIPLRIPSP 368
>SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)
Length = 402
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 126 TASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPQRE--EQTRTIDSHKETEKRAC 299
T S E+ L+ ++Y M G N+E++Q++ +C D ++ +QT + +E+ A
Sbjct: 85 TQSDLEDLLEDIKVYLE-MDQGKNAEYWQDITIICKDEIKKLRKQTENYNDRRESIHTAV 143
Query: 300 SFD 308
D
Sbjct: 144 HSD 146
>SB_58656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 447 SHY*ERTHRKPERSCPCRCYYKSVPGRRDS 358
+HY TH +PE +C C Y S PG+ S
Sbjct: 12 THYDTETHTQPEVTC-CHQTYVSDPGKLHS 40
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = -1
Query: 181 IVLAYNCS---GFKYSSEKLAVGTVP 113
+ L YNCS G+K +L VGT+P
Sbjct: 266 LTLGYNCSCFSGYKLQGARLCVGTLP 291
>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 HQGNNGVMPQGTVPTASFSEEYLKPEQLYASTMLHGSNS-EFFQELDQLCSDPQREEQ 254
H +G++ S E + QL A +H + +FF+ L + CSDP E+
Sbjct: 163 HDDFSGILLPAVQKALLRSPEVVLEWQLRAKEEIHRQQAIQFFKNLSKQCSDPAAVEE 220
>SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 168 YASTMLHGSNSEFFQELDQLCSDPQREEQTR---TIDSHKETEKRA 296
+ TM S SE QEL +L DP+ +E T +ID+ K + A
Sbjct: 54 HVKTMAEESMSEASQELKELKGDPESQEPTNCAISIDTGKVLDVEA 99
>SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 295 HVPSTHRTHHSAYKGGMYRTITIPTARHAFIVTPAWTR 408
H PS+HRT H A + TI + + WT+
Sbjct: 40 HPPSSHRTVHDAPRASESATIANESTTKTHAESSGWTK 77
>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 255 FVLPFVDRSTTDPVLERTLSSNREALCSRITVPV-SNIPRKSW 130
F+ P DR T+D +LER L N + R+ V P++ W
Sbjct: 824 FLKPTYDRLTSDALLERCLPGNTQNPNERLNSLVWLRCPKQRW 866
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,287
Number of Sequences: 59808
Number of extensions: 349640
Number of successful extensions: 1140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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