BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0589 (475 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z98050-1|CAI21070.1| 2717|Homo sapiens human immunodeficiency vi... 29 8.2 X51435-1|CAA35798.1| 2717|Homo sapiens protein ( Human PRDII-BF1... 29 8.2 AL391828-1|CAH73909.1| 2717|Homo sapiens human immunodeficiency ... 29 8.2 AL157373-1|CAH73982.1| 2717|Homo sapiens human immunodeficiency ... 29 8.2 AL137221-1|CAI14768.1| 2717|Homo sapiens human immunodeficiency ... 29 8.2 >Z98050-1|CAI21070.1| 2717|Homo sapiens human immunodeficiency virus type I enhancer binding protein 1 protein. Length = 2717 Score = 29.1 bits (62), Expect = 8.2 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Frame = +3 Query: 39 SQKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQ---LYASTMLH-----GS 194 S K+ N V G NG P G + AS SEE + P++ L + L G+ Sbjct: 93 SHKKQNYIPVKNGKQFTKQNGETP-GIIAEASKSEESVSPKKPLFLQQPSELRRWRSEGA 151 Query: 195 NSEFFQELDQLCSDPQREEQTRTIDS 272 + F +LD+ C +TRT +S Sbjct: 152 DPAKFSDLDEQCDSSSLSSKTRTDNS 177 >X51435-1|CAA35798.1| 2717|Homo sapiens protein ( Human PRDII-BF1 gene for a DNA-binding protein. ). Length = 2717 Score = 29.1 bits (62), Expect = 8.2 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Frame = +3 Query: 39 SQKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQ---LYASTMLH-----GS 194 S K+ N V G NG P G + AS SEE + P++ L + L G+ Sbjct: 93 SHKKQNYIPVKNGKQFTKQNGETP-GIIAEASKSEESVSPKKPLFLQQPSELRRWRSEGA 151 Query: 195 NSEFFQELDQLCSDPQREEQTRTIDS 272 + F +LD+ C +TRT +S Sbjct: 152 DPAKFSDLDEQCDSSSLSSKTRTDNS 177 >AL391828-1|CAH73909.1| 2717|Homo sapiens human immunodeficiency virus type I enhancer binding protein 1 protein. Length = 2717 Score = 29.1 bits (62), Expect = 8.2 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Frame = +3 Query: 39 SQKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQ---LYASTMLH-----GS 194 S K+ N V G NG P G + AS SEE + P++ L + L G+ Sbjct: 93 SHKKQNYIPVKNGKQFTKQNGETP-GIIAEASKSEESVSPKKPLFLQQPSELRRWRSEGA 151 Query: 195 NSEFFQELDQLCSDPQREEQTRTIDS 272 + F +LD+ C +TRT +S Sbjct: 152 DPAKFSDLDEQCDSSSLSSKTRTDNS 177 >AL157373-1|CAH73982.1| 2717|Homo sapiens human immunodeficiency virus type I enhancer binding protein 1 protein. Length = 2717 Score = 29.1 bits (62), Expect = 8.2 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Frame = +3 Query: 39 SQKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQ---LYASTMLH-----GS 194 S K+ N V G NG P G + AS SEE + P++ L + L G+ Sbjct: 93 SHKKQNYIPVKNGKQFTKQNGETP-GIIAEASKSEESVSPKKPLFLQQPSELRRWRSEGA 151 Query: 195 NSEFFQELDQLCSDPQREEQTRTIDS 272 + F +LD+ C +TRT +S Sbjct: 152 DPAKFSDLDEQCDSSSLSSKTRTDNS 177 >AL137221-1|CAI14768.1| 2717|Homo sapiens human immunodeficiency virus type I enhancer binding protein 1 protein. Length = 2717 Score = 29.1 bits (62), Expect = 8.2 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Frame = +3 Query: 39 SQKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQ---LYASTMLH-----GS 194 S K+ N V G NG P G + AS SEE + P++ L + L G+ Sbjct: 93 SHKKQNYIPVKNGKQFTKQNGETP-GIIAEASKSEESVSPKKPLFLQQPSELRRWRSEGA 151 Query: 195 NSEFFQELDQLCSDPQREEQTRTIDS 272 + F +LD+ C +TRT +S Sbjct: 152 DPAKFSDLDEQCDSSSLSSKTRTDNS 177 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 70,574,266 Number of Sequences: 237096 Number of extensions: 1533160 Number of successful extensions: 5331 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5331 length of database: 76,859,062 effective HSP length: 84 effective length of database: 56,942,998 effective search space used: 4156838854 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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