BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0589 (475 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical pr... 34 0.045 AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical ... 29 1.3 Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 28 3.0 Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 3.0 Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 28 3.0 AF040654-7|AAK21450.2| 362|Caenorhabditis elegans Hypothetical ... 28 3.9 Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical pr... 27 6.9 Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 27 6.9 U39653-4|AAL56624.1| 649|Caenorhabditis elegans Prion-like-(q/n... 27 6.9 U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 6.9 AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 6.9 AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 27 6.9 Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 27 9.1 Z19555-3|CAA79616.1| 182|Caenorhabditis elegans Hypothetical pr... 27 9.1 AF068721-9|AAC19265.1| 570|Caenorhabditis elegans Hypothetical ... 27 9.1 >Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical protein ZK1058.6 protein. Length = 305 Score = 34.3 bits (75), Expect = 0.045 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Frame = -2 Query: 426 HRKPERSCPCRCYYKSVPGRRDSYRPVHPTLVGRMMCAVCRRN-MPVFRF-LYENQWSVF 253 HRK + RC + G S PV T VG++ A+C N MP++R LY + ++ Sbjct: 126 HRKLLPTALERCVWGQGDG---STMPVFSTSVGKIGSAICWENYMPLYRMTLYSKEIQIY 182 Query: 252 VLPFVD 235 + P VD Sbjct: 183 LAPTVD 188 >AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical protein R119.5 protein. Length = 659 Score = 29.5 bits (63), Expect = 1.3 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = +3 Query: 186 HGSNSEFFQELDQLCSDPQREEQTRTIDSHKETEKRACSFDTPHTS 323 +G SE QEL +PQ T T E E+ CS D T+ Sbjct: 527 NGDLSEDEQELSDALEEPQESPSTSTESQVSEDEEPCCSTDPASTT 572 >Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical protein F41E7.2 protein. Length = 558 Score = 28.3 bits (60), Expect = 3.0 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -2 Query: 342 PTLVGRMMCAVCRRNMPVF-RFLYENQWSVFVL 247 P+L+G M+ + RN+P F Y N++ F+L Sbjct: 95 PSLIGCMLVGIAMRNVPQFGELFYINEYWQFIL 127 >Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein C27B7.4 protein. Length = 1274 Score = 28.3 bits (60), Expect = 3.0 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Frame = +3 Query: 42 QKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQ---LYASTMLHGSNSEFFQ 212 Q++ ++ L G++ GNNG+MP F ++ P+Q + + H +N + Sbjct: 656 QQQQQQQQQLQGMMMMGNNGMMP-------GFGAQF-HPQQNGMMMQNGSWHPNNYQMPS 707 Query: 213 ELDQLCSDPQREEQTRTIDSHKETEKRACSFDTP 314 + + S+P + T S K+T+K S P Sbjct: 708 PFNSIPSNPSTPTSSSTSKSAKKTKKPRGSKKAP 741 >Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical protein F41E7.2 protein. Length = 558 Score = 28.3 bits (60), Expect = 3.0 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -2 Query: 342 PTLVGRMMCAVCRRNMPVF-RFLYENQWSVFVL 247 P+L+G M+ + RN+P F Y N++ F+L Sbjct: 95 PSLIGCMLVGIAMRNVPQFGELFYINEYWQFIL 127 >AF040654-7|AAK21450.2| 362|Caenorhabditis elegans Hypothetical protein R06B10.3 protein. Length = 362 Score = 27.9 bits (59), Expect = 3.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 357 NYPYGQARFYSNTCMDTISPAFYGF 431 +Y + NTC+ +SPAFYGF Sbjct: 210 DYLFANPTSDGNTCLYYMSPAFYGF 234 >Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical protein H25K10.6 protein. Length = 518 Score = 27.1 bits (57), Expect = 6.9 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +3 Query: 159 EQLYASTMLHGSNSEFFQELDQLCSDPQREEQT 257 EQ++ T + N++FF ++D++C+ E+T Sbjct: 61 EQVFNYTEITSENAQFFPKIDEICAIITINEKT 93 >Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical protein C46F11.4 protein. Length = 811 Score = 27.1 bits (57), Expect = 6.9 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 108 PQGTVPTASFSEEYLKPEQLYASTMLHGSNSE 203 P + ++ E+ +K EQ YA+ M +GS SE Sbjct: 50 PNRNILLSNRKEQEMKKEQEYANLMAYGSTSE 81 >U39653-4|AAL56624.1| 649|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 65, isoform b protein. Length = 649 Score = 27.1 bits (57), Expect = 6.9 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = +3 Query: 342 DVQDDNYPYGQARFYSNTCMDTISPAFYGFALNND*WPIPEEA 470 D Q+D +G +RF N + + F L D P PE++ Sbjct: 396 DAQNDRGHFGMSRFLENNTNEHNATGISSFFLEKDSAPNPEDS 438 >U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell lineage protein 13 protein. Length = 2248 Score = 27.1 bits (57), Expect = 6.9 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -3 Query: 137 KAGCWHCSLRHYSVVSLVNHSG*HRSPVGSFLALNDLGL 21 K C CSL Y+ SL +H HR G+ L G+ Sbjct: 1555 KFKCQKCSLAFYTNGSLESHMRDHRQDAGAQLCTETYGI 1593 >AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger protein LIN-13 protein. Length = 2248 Score = 27.1 bits (57), Expect = 6.9 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -3 Query: 137 KAGCWHCSLRHYSVVSLVNHSG*HRSPVGSFLALNDLGL 21 K C CSL Y+ SL +H HR G+ L G+ Sbjct: 1555 KFKCQKCSLAFYTNGSLESHMRDHRQDAGAQLCTETYGI 1593 >AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical protein R52.2 protein. Length = 1019 Score = 27.1 bits (57), Expect = 6.9 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +3 Query: 39 SQKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQLYAS 176 S + +N+ T+ T +I +P TVP+ S ++ P+Q AS Sbjct: 11 SSQSSNQPTIPTYLIQPSIQSTIPLQTVPSTQQSCQHTLPQQTLAS 56 >Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical protein F09B12.2 protein. Length = 295 Score = 26.6 bits (56), Expect = 9.1 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Frame = +1 Query: 172 RAQCFTVRTQSSFKNWISCAPIHKGKN-KHGPLILIKKPKNGHVPSTH-----RTHH 324 RA CF V + + NW+ I G N H L + KP H S H R HH Sbjct: 64 RATCFGVLVFNLYSNWVYM--IKTGPNGHHSALPNVIKPGYKHCHSCHSMSPLRAHH 118 >Z19555-3|CAA79616.1| 182|Caenorhabditis elegans Hypothetical protein F02A9.2 protein. Length = 182 Score = 26.6 bits (56), Expect = 9.1 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 235 IHKGKNKHGPLILIKKPKNGHVPSTHRTHHSAYKG 339 I +G+ H + +KP + +T +TH AYKG Sbjct: 114 IAEGRKIHAQYLAGEKPSLDTLKTTAKTHIEAYKG 148 >AF068721-9|AAC19265.1| 570|Caenorhabditis elegans Hypothetical protein ZK1055.7 protein. Length = 570 Score = 26.6 bits (56), Expect = 9.1 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Frame = +3 Query: 42 QKRTNRRTV-------LTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQLYASTMLHGSNS 200 QK T+R TV L V Q G++ AS +E L E L +GSNS Sbjct: 103 QKITDRGTVVQKCVDNLDKVFEQVGGGLVNPPKDGVASLNEGTL--ESLTNFFQFYGSNS 160 Query: 201 EFFQELDQLCSDPQREEQTRTIDSHKETEKRACSFDTPHTSF 326 E ++E + RE+Q + S E E RA + +F Sbjct: 161 ELYREKLRSVEAGHREQQEKV--SKLENELRALMHNLNEEAF 200 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,337,539 Number of Sequences: 27780 Number of extensions: 253541 Number of successful extensions: 855 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 811 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 855 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 860942358 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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