Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0589
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    34   0.045
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U39653-4|AAL56624.1|  649|Caenorhabditis elegans Prion-like-(q/n...    27   6.9  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   6.9  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   6.9  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z19555-3|CAA79616.1|  182|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 34.3 bits (75), Expect = 0.045
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -2

Query: 426 HRKPERSCPCRCYYKSVPGRRDSYRPVHPTLVGRMMCAVCRRN-MPVFRF-LYENQWSVF 253
           HRK   +   RC +    G   S  PV  T VG++  A+C  N MP++R  LY  +  ++
Sbjct: 126 HRKLLPTALERCVWGQGDG---STMPVFSTSVGKIGSAICWENYMPLYRMTLYSKEIQIY 182

Query: 252 VLPFVD 235
           + P VD
Sbjct: 183 LAPTVD 188


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 186 HGSNSEFFQELDQLCSDPQREEQTRTIDSHKETEKRACSFDTPHTS 323
           +G  SE  QEL     +PQ    T T     E E+  CS D   T+
Sbjct: 527 NGDLSEDEQELSDALEEPQESPSTSTESQVSEDEEPCCSTDPASTT 572


>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 342 PTLVGRMMCAVCRRNMPVF-RFLYENQWSVFVL 247
           P+L+G M+  +  RN+P F    Y N++  F+L
Sbjct: 95  PSLIGCMLVGIAMRNVPQFGELFYINEYWQFIL 127


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = +3

Query: 42  QKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQ---LYASTMLHGSNSEFFQ 212
           Q++  ++  L G++  GNNG+MP        F  ++  P+Q   +  +   H +N +   
Sbjct: 656 QQQQQQQQQLQGMMMMGNNGMMP-------GFGAQF-HPQQNGMMMQNGSWHPNNYQMPS 707

Query: 213 ELDQLCSDPQREEQTRTIDSHKETEKRACSFDTP 314
             + + S+P     + T  S K+T+K   S   P
Sbjct: 708 PFNSIPSNPSTPTSSSTSKSAKKTKKPRGSKKAP 741


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 342 PTLVGRMMCAVCRRNMPVF-RFLYENQWSVFVL 247
           P+L+G M+  +  RN+P F    Y N++  F+L
Sbjct: 95  PSLIGCMLVGIAMRNVPQFGELFYINEYWQFIL 127


>AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical
           protein R06B10.3 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 357 NYPYGQARFYSNTCMDTISPAFYGF 431
           +Y +       NTC+  +SPAFYGF
Sbjct: 210 DYLFANPTSDGNTCLYYMSPAFYGF 234


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 159 EQLYASTMLHGSNSEFFQELDQLCSDPQREEQT 257
           EQ++  T +   N++FF ++D++C+     E+T
Sbjct: 61  EQVFNYTEITSENAQFFPKIDEICAIITINEKT 93


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 108 PQGTVPTASFSEEYLKPEQLYASTMLHGSNSE 203
           P   +  ++  E+ +K EQ YA+ M +GS SE
Sbjct: 50  PNRNILLSNRKEQEMKKEQEYANLMAYGSTSE 81


>U39653-4|AAL56624.1|  649|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
           isoform b protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 342 DVQDDNYPYGQARFYSNTCMDTISPAFYGFALNND*WPIPEEA 470
           D Q+D   +G +RF  N   +  +     F L  D  P PE++
Sbjct: 396 DAQNDRGHFGMSRFLENNTNEHNATGISSFFLEKDSAPNPEDS 438


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 137  KAGCWHCSLRHYSVVSLVNHSG*HRSPVGSFLALNDLGL 21
            K  C  CSL  Y+  SL +H   HR   G+ L     G+
Sbjct: 1555 KFKCQKCSLAFYTNGSLESHMRDHRQDAGAQLCTETYGI 1593


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 137  KAGCWHCSLRHYSVVSLVNHSG*HRSPVGSFLALNDLGL 21
            K  C  CSL  Y+  SL +H   HR   G+ L     G+
Sbjct: 1555 KFKCQKCSLAFYTNGSLESHMRDHRQDAGAQLCTETYGI 1593


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 39  SQKRTNRRTVLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQLYAS 176
           S + +N+ T+ T +I       +P  TVP+   S ++  P+Q  AS
Sbjct: 11  SSQSSNQPTIPTYLIQPSIQSTIPLQTVPSTQQSCQHTLPQQTLAS 56


>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
 Frame = +1

Query: 172 RAQCFTVRTQSSFKNWISCAPIHKGKN-KHGPLILIKKPKNGHVPSTH-----RTHH 324
           RA CF V   + + NW+    I  G N  H  L  + KP   H  S H     R HH
Sbjct: 64  RATCFGVLVFNLYSNWVYM--IKTGPNGHHSALPNVIKPGYKHCHSCHSMSPLRAHH 118


>Z19555-3|CAA79616.1|  182|Caenorhabditis elegans Hypothetical
           protein F02A9.2 protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 235 IHKGKNKHGPLILIKKPKNGHVPSTHRTHHSAYKG 339
           I +G+  H   +  +KP    + +T +TH  AYKG
Sbjct: 114 IAEGRKIHAQYLAGEKPSLDTLKTTAKTHIEAYKG 148


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
 Frame = +3

Query: 42  QKRTNRRTV-------LTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQLYASTMLHGSNS 200
           QK T+R TV       L  V  Q   G++       AS +E  L  E L      +GSNS
Sbjct: 103 QKITDRGTVVQKCVDNLDKVFEQVGGGLVNPPKDGVASLNEGTL--ESLTNFFQFYGSNS 160

Query: 201 EFFQELDQLCSDPQREEQTRTIDSHKETEKRACSFDTPHTSF 326
           E ++E  +      RE+Q +   S  E E RA   +    +F
Sbjct: 161 ELYREKLRSVEAGHREQQEKV--SKLENELRALMHNLNEEAF 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,337,539
Number of Sequences: 27780
Number of extensions: 253541
Number of successful extensions: 855
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)