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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0588
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    32   0.088
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    31   0.15 
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   0.26 
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    28   1.4  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    27   1.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.5  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   3.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   4.4  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   4.4  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.6  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    25   7.6  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = +3

Query: 213  FQLKQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADK---RKNSKTIDTKNAKV 383
            F+ K+ E +  S +++L NL S +  +    A L+   Q  +K      S+  + +NA  
Sbjct: 960  FKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRLREFENALW 1019

Query: 384  GDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKRRTVGAATWNFDSK 533
                       F+E       + KAE I  ++ ++++RT  +   N ++K
Sbjct: 1020 DINSSIDELVKFIEFESKQMNSVKAERIELENQIQEQRTALSEVGNNENK 1069


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
 Frame = +3

Query: 222 KQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKNAKVGDQEEP 401
           +Q++    ++K+DL  ++S    S+    +L+  K+E ++    K  + +     +  + 
Sbjct: 608 EQEQVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEERIAQQKREEKRRLAYEESLKR 667

Query: 402 KAKTGFLEKTFSSFKAT--------KAEAIAQKSILEK 491
            AK    +KT SS  AT          E+IA K++L K
Sbjct: 668 HAKKLHEKKTKSSQDATIDHHLTSHSPESIAFKAVLAK 705


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect(2) = 0.26
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 467 YRFSFCRFETTECFLQKTCFSFGFLLISYFCIF-SIYCLTVFTFV 336
           +  SF R    +CF+    F   F+L   F +F  +  LT F F+
Sbjct: 357 FAHSFLRTPMFDCFISSESFQSFFILQKQFQLFQDLALLTSFDFL 401



 Score = 23.4 bits (48), Expect(2) = 0.26
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 668 RGPSQWPLRVFTPFFTCGNSTCNRIYGPPYVWSSNQ 561
           R P+++ L +  P F   N  C+R    P  WS  Q
Sbjct: 317 RAPAEF-LLLNQPIFQAFNKKCSRFDHEPVEWSCAQ 351


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/47 (29%), Positives = 31/47 (65%)
 Frame = +1

Query: 322 QNKKPTNVKTVRQ*ILKMQK*EIKRNPKLKQVFWRKHSVVSKRQKLK 462
           +N+K   +K V Q   K+++ EI++  ++KQ+   K S+ +++Q+L+
Sbjct: 58  ENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLNEEKLSIEARKQQLE 104


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 109 RLNPNKEGRCRAPITVTYKFFV 44
           R+NP+ EG+ R+ IT  Y+F +
Sbjct: 150 RINPDGEGQSRSTITQAYEFVI 171


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 25/118 (21%), Positives = 45/118 (38%)
 Frame = +3

Query: 21   FKLALHPITKNLYVTVIGARHLPSLFGLSRAHGYLVKVKVFPGESKYETTLQENSWPVWN 200
            F L L P  +N+ +TV+  +    +FGL++A  + +  K    +    +  +E    +W 
Sbjct: 1307 FHLVLLPTMENM-ITVLTEKPEHKIFGLAQAQMFNIICKTVLIDMNVLSAQKEMLHTLWL 1365

Query: 201  EDFKFQLKQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKN 374
            +     +K      S    ++   +   F+ L     L  P  E D       I T N
Sbjct: 1366 KLMDVAIKLSSIHGSESMAEVMESIKNVFMILHGAGALAGPTIEVDPEIPDHLIKTWN 1423


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 315 EPPKQEADKRKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILE 488
           E P +    RKNS T   K  +    +  K++  FL+K+  S +    +     SI+E
Sbjct: 129 EKPVKSKQLRKNSVTEFEKPIETKKSKHRKSRNKFLDKSSGSMEIESWDNSTSDSIIE 186


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 524 KIPSGCPYGPSFFQNRFLCYRFSFCRFETTECFLQKTCFSFGF--LLI-SYFCIFSIYCL 354
           ++    PY  +F Q  + C   S+ R+     ++    F+F F  L+I S F    +  +
Sbjct: 508 RVKDTSPYTVTFSQQLWYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTV 567

Query: 353 TVFTFVGFLFWRL 315
            VF+  G LF+ +
Sbjct: 568 DVFSRGGVLFFSI 580


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +3

Query: 135 KVFPGESKYETTLQENSWPVWNEDFKFQLKQKEAKKSSDKI--DLQNLVS--GHFLSLTI 302
           K+FPG++ Y   +  +  P   ED  F +  K  +KS+ +I     N+ S  G     ++
Sbjct: 322 KLFPGDNPYSFPITSSVHP--GEDVNFTVALKVPEKSNKEIFTAFFNICSDDGSVFHKSL 379

Query: 303 YAILEPPKQEADKRKNS 353
            A L  PK  +   K+S
Sbjct: 380 CAFLRVPKSFSRISKSS 396


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 186 WPVWNEDFKFQLKQKEAKKSSDKIDLQNLVSGHF-LSLTIYAILEPPKQEADKRKNSKTI 362
           WP+ N D    + +KE    S K +L N +       +     L P  QE DK       
Sbjct: 276 WPITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQEMDKEHARIDF 335

Query: 363 DTKNAKV 383
           D  ++++
Sbjct: 336 DNVDSRL 342


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -2

Query: 607 LAIAFMGLHMSGVPIKPFFKSF*NNLESKFQVAAPTVRRFSKIDFCAIASAFVALKLL 434
           LA   MGL   G+  KP+F ++ N + S  +V+   V  ++ I     A A   L L+
Sbjct: 302 LAATTMGLVALGLENKPYFPTYPNRM-SDLEVSEGLVLPYAAIALMGRAGANATLLLV 358


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +3

Query: 270 LVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKNAKVGDQ---EEPKAKTGFLEKTFSS 440
           L +G F   T  A L PP    D  +NS T  T  A +  Q      + +    E     
Sbjct: 176 LSNGSFPRQTNTAPLNPPVHLKDNIRNSATPSTSQADIPTQYPINSTQKQQAKYEAEIEG 235

Query: 441 FKATKAEAIAQKSILE 488
           +KA  A    + S+L+
Sbjct: 236 YKAKLAGTYHEISVLQ 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,101
Number of Sequences: 5004
Number of extensions: 59217
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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