BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0588 (677 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 32 0.088 SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 31 0.15 SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 0.26 SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 28 1.4 SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 27 1.9 SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.5 SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 3.3 SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 4.4 SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 4.4 SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 5.8 SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.6 SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 7.6 >SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1324 Score = 31.9 bits (69), Expect = 0.088 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Frame = +3 Query: 213 FQLKQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADK---RKNSKTIDTKNAKV 383 F+ K+ E + S +++L NL S + + A L+ Q +K S+ + +NA Sbjct: 960 FKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRLREFENALW 1019 Query: 384 GDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKRRTVGAATWNFDSK 533 F+E + KAE I ++ ++++RT + N ++K Sbjct: 1020 DINSSIDELVKFIEFESKQMNSVKAERIELENQIQEQRTALSEVGNNENK 1069 >SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 798 Score = 31.1 bits (67), Expect = 0.15 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 8/98 (8%) Frame = +3 Query: 222 KQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKNAKVGDQEEP 401 +Q++ ++K+DL ++S S+ +L+ K+E ++ K + + + + Sbjct: 608 EQEQVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEERIAQQKREEKRRLAYEESLKR 667 Query: 402 KAKTGFLEKTFSSFKAT--------KAEAIAQKSILEK 491 AK +KT SS AT E+IA K++L K Sbjct: 668 HAKKLHEKKTKSSQDATIDHHLTSHSPESIAFKAVLAK 705 >SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces pombe|chr 3|||Manual Length = 413 Score = 25.4 bits (53), Expect(2) = 0.26 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -1 Query: 467 YRFSFCRFETTECFLQKTCFSFGFLLISYFCIF-SIYCLTVFTFV 336 + SF R +CF+ F F+L F +F + LT F F+ Sbjct: 357 FAHSFLRTPMFDCFISSESFQSFFILQKQFQLFQDLALLTSFDFL 401 Score = 23.4 bits (48), Expect(2) = 0.26 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = -1 Query: 668 RGPSQWPLRVFTPFFTCGNSTCNRIYGPPYVWSSNQ 561 R P+++ L + P F N C+R P WS Q Sbjct: 317 RAPAEF-LLLNQPIFQAFNKKCSRFDHEPVEWSCAQ 351 >SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Schizosaccharomyces pombe|chr 2|||Manual Length = 134 Score = 27.9 bits (59), Expect = 1.4 Identities = 14/47 (29%), Positives = 31/47 (65%) Frame = +1 Query: 322 QNKKPTNVKTVRQ*ILKMQK*EIKRNPKLKQVFWRKHSVVSKRQKLK 462 +N+K +K V Q K+++ EI++ ++KQ+ K S+ +++Q+L+ Sbjct: 58 ENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLNEEKLSIEARKQQLE 104 >SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity factor complex subunit Rna14|Schizosaccharomyces pombe|chr 1|||Manual Length = 733 Score = 27.5 bits (58), Expect = 1.9 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 109 RLNPNKEGRCRAPITVTYKFFV 44 R+NP+ EG+ R+ IT Y+F + Sbjct: 150 RINPDGEGQSRSTITQAYEFVI 171 >SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1462 Score = 27.1 bits (57), Expect = 2.5 Identities = 25/118 (21%), Positives = 45/118 (38%) Frame = +3 Query: 21 FKLALHPITKNLYVTVIGARHLPSLFGLSRAHGYLVKVKVFPGESKYETTLQENSWPVWN 200 F L L P +N+ +TV+ + +FGL++A + + K + + +E +W Sbjct: 1307 FHLVLLPTMENM-ITVLTEKPEHKIFGLAQAQMFNIICKTVLIDMNVLSAQKEMLHTLWL 1365 Query: 201 EDFKFQLKQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKN 374 + +K S ++ + F+ L L P E D I T N Sbjct: 1366 KLMDVAIKLSSIHGSESMAEVMESIKNVFMILHGAGALAGPTIEVDPEIPDHLIKTWN 1423 >SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 549 Score = 26.6 bits (56), Expect = 3.3 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = +3 Query: 315 EPPKQEADKRKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILE 488 E P + RKNS T K + + K++ FL+K+ S + + SI+E Sbjct: 129 EKPVKSKQLRKNSVTEFEKPIETKKSKHRKSRNKFLDKSSGSMEIESWDNSTSDSIIE 186 >SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter Bfr1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1530 Score = 26.2 bits (55), Expect = 4.4 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = -1 Query: 524 KIPSGCPYGPSFFQNRFLCYRFSFCRFETTECFLQKTCFSFGF--LLI-SYFCIFSIYCL 354 ++ PY +F Q + C S+ R+ ++ F+F F L+I S F + + Sbjct: 508 RVKDTSPYTVTFSQQLWYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTV 567 Query: 353 TVFTFVGFLFWRL 315 VF+ G LF+ + Sbjct: 568 DVFSRGGVLFFSI 580 >SPBP35G2.11c |||transcription related zf-ZZ type zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 397 Score = 26.2 bits (55), Expect = 4.4 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Frame = +3 Query: 135 KVFPGESKYETTLQENSWPVWNEDFKFQLKQKEAKKSSDKI--DLQNLVS--GHFLSLTI 302 K+FPG++ Y + + P ED F + K +KS+ +I N+ S G ++ Sbjct: 322 KLFPGDNPYSFPITSSVHP--GEDVNFTVALKVPEKSNKEIFTAFFNICSDDGSVFHKSL 379 Query: 303 YAILEPPKQEADKRKNS 353 A L PK + K+S Sbjct: 380 CAFLRVPKSFSRISKSS 396 >SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|||Manual Length = 578 Score = 25.8 bits (54), Expect = 5.8 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Frame = +3 Query: 186 WPVWNEDFKFQLKQKEAKKSSDKIDLQNLVSGHF-LSLTIYAILEPPKQEADKRKNSKTI 362 WP+ N D + +KE S K +L N + + L P QE DK Sbjct: 276 WPITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQEMDKEHARIDF 335 Query: 363 DTKNAKV 383 D ++++ Sbjct: 336 DNVDSRL 342 >SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 664 Score = 25.4 bits (53), Expect = 7.6 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = -2 Query: 607 LAIAFMGLHMSGVPIKPFFKSF*NNLESKFQVAAPTVRRFSKIDFCAIASAFVALKLL 434 LA MGL G+ KP+F ++ N + S +V+ V ++ I A A L L+ Sbjct: 302 LAATTMGLVALGLENKPYFPTYPNRM-SDLEVSEGLVLPYAAIALMGRAGANATLLLV 358 >SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr 1|||Manual Length = 474 Score = 25.4 bits (53), Expect = 7.6 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Frame = +3 Query: 270 LVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKNAKVGDQ---EEPKAKTGFLEKTFSS 440 L +G F T A L PP D +NS T T A + Q + + E Sbjct: 176 LSNGSFPRQTNTAPLNPPVHLKDNIRNSATPSTSQADIPTQYPINSTQKQQAKYEAEIEG 235 Query: 441 FKATKAEAIAQKSILE 488 +KA A + S+L+ Sbjct: 236 YKAKLAGTYHEISVLQ 251 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,875,101 Number of Sequences: 5004 Number of extensions: 59217 Number of successful extensions: 178 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 176 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 178 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 311890690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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