Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0588
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 32 0.088
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 31 0.15
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 0.26
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 28 1.4
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 27 1.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.5
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 3.3
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 4.4
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 4.4
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 5.8
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.6
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 7.6
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.9 bits (69), Expect = 0.088
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Frame = +3
Query: 213 FQLKQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADK---RKNSKTIDTKNAKV 383
F+ K+ E + S +++L NL S + + A L+ Q +K S+ + +NA
Sbjct: 960 FKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRLREFENALW 1019
Query: 384 GDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKRRTVGAATWNFDSK 533
F+E + KAE I ++ ++++RT + N ++K
Sbjct: 1020 DINSSIDELVKFIEFESKQMNSVKAERIELENQIQEQRTALSEVGNNENK 1069
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 31.1 bits (67), Expect = 0.15
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Frame = +3
Query: 222 KQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKNAKVGDQEEP 401
+Q++ ++K+DL ++S S+ +L+ K+E ++ K + + + +
Sbjct: 608 EQEQVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEERIAQQKREEKRRLAYEESLKR 667
Query: 402 KAKTGFLEKTFSSFKAT--------KAEAIAQKSILEK 491
AK +KT SS AT E+IA K++L K
Sbjct: 668 HAKKLHEKKTKSSQDATIDHHLTSHSPESIAFKAVLAK 705
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect(2) = 0.26
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 467 YRFSFCRFETTECFLQKTCFSFGFLLISYFCIF-SIYCLTVFTFV 336
+ SF R +CF+ F F+L F +F + LT F F+
Sbjct: 357 FAHSFLRTPMFDCFISSESFQSFFILQKQFQLFQDLALLTSFDFL 401
Score = 23.4 bits (48), Expect(2) = 0.26
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 668 RGPSQWPLRVFTPFFTCGNSTCNRIYGPPYVWSSNQ 561
R P+++ L + P F N C+R P WS Q
Sbjct: 317 RAPAEF-LLLNQPIFQAFNKKCSRFDHEPVEWSCAQ 351
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +1
Query: 322 QNKKPTNVKTVRQ*ILKMQK*EIKRNPKLKQVFWRKHSVVSKRQKLK 462
+N+K +K V Q K+++ EI++ ++KQ+ K S+ +++Q+L+
Sbjct: 58 ENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLNEEKLSIEARKQQLE 104
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 109 RLNPNKEGRCRAPITVTYKFFV 44
R+NP+ EG+ R+ IT Y+F +
Sbjct: 150 RINPDGEGQSRSTITQAYEFVI 171
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.5
Identities = 25/118 (21%), Positives = 45/118 (38%)
Frame = +3
Query: 21 FKLALHPITKNLYVTVIGARHLPSLFGLSRAHGYLVKVKVFPGESKYETTLQENSWPVWN 200
F L L P +N+ +TV+ + +FGL++A + + K + + +E +W
Sbjct: 1307 FHLVLLPTMENM-ITVLTEKPEHKIFGLAQAQMFNIICKTVLIDMNVLSAQKEMLHTLWL 1365
Query: 201 EDFKFQLKQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKN 374
+ +K S ++ + F+ L L P E D I T N
Sbjct: 1366 KLMDVAIKLSSIHGSESMAEVMESIKNVFMILHGAGALAGPTIEVDPEIPDHLIKTWN 1423
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 315 EPPKQEADKRKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILE 488
E P + RKNS T K + + K++ FL+K+ S + + SI+E
Sbjct: 129 EKPVKSKQLRKNSVTEFEKPIETKKSKHRKSRNKFLDKSSGSMEIESWDNSTSDSIIE 186
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -1
Query: 524 KIPSGCPYGPSFFQNRFLCYRFSFCRFETTECFLQKTCFSFGF--LLI-SYFCIFSIYCL 354
++ PY +F Q + C S+ R+ ++ F+F F L+I S F + +
Sbjct: 508 RVKDTSPYTVTFSQQLWYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTV 567
Query: 353 TVFTFVGFLFWRL 315
VF+ G LF+ +
Sbjct: 568 DVFSRGGVLFFSI 580
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +3
Query: 135 KVFPGESKYETTLQENSWPVWNEDFKFQLKQKEAKKSSDKI--DLQNLVS--GHFLSLTI 302
K+FPG++ Y + + P ED F + K +KS+ +I N+ S G ++
Sbjct: 322 KLFPGDNPYSFPITSSVHP--GEDVNFTVALKVPEKSNKEIFTAFFNICSDDGSVFHKSL 379
Query: 303 YAILEPPKQEADKRKNS 353
A L PK + K+S
Sbjct: 380 CAFLRVPKSFSRISKSS 396
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +3
Query: 186 WPVWNEDFKFQLKQKEAKKSSDKIDLQNLVSGHF-LSLTIYAILEPPKQEADKRKNSKTI 362
WP+ N D + +KE S K +L N + + L P QE DK
Sbjct: 276 WPITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQEMDKEHARIDF 335
Query: 363 DTKNAKV 383
D ++++
Sbjct: 336 DNVDSRL 342
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 607 LAIAFMGLHMSGVPIKPFFKSF*NNLESKFQVAAPTVRRFSKIDFCAIASAFVALKLL 434
LA MGL G+ KP+F ++ N + S +V+ V ++ I A A L L+
Sbjct: 302 LAATTMGLVALGLENKPYFPTYPNRM-SDLEVSEGLVLPYAAIALMGRAGANATLLLV 358
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +3
Query: 270 LVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKNAKVGDQ---EEPKAKTGFLEKTFSS 440
L +G F T A L PP D +NS T T A + Q + + E
Sbjct: 176 LSNGSFPRQTNTAPLNPPVHLKDNIRNSATPSTSQADIPTQYPINSTQKQQAKYEAEIEG 235
Query: 441 FKATKAEAIAQKSILE 488
+KA A + S+L+
Sbjct: 236 YKAKLAGTYHEISVLQ 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,101
Number of Sequences: 5004
Number of extensions: 59217
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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