Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0587
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   7.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.5  

>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 389 LKIIDVYFKKILHLSFRILGQIFKGKMR*FPLL 291
           L + DV+ KK    S R   Q+F+  +  FPLL
Sbjct: 414 LCVTDVWIKKATAFSKRRQSQVFEEDLESFPLL 446


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 361 RFCI-YLLEYWDKFLKVKCVNSRYYVTN 281
           RFC   LLEY+D +LK K +     +TN
Sbjct: 545 RFCFKQLLEYYDIYLKFKLLADWRLLTN 572


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 398 YRFLKIIDVYFKKILHLSFRILGQIFKG 315
           Y FL +    F +  HL F I G+ + G
Sbjct: 691 YAFLNLFFAKFPQYAHLDFHIAGESYAG 718


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 456  YNFNQQYYWCSSFLFARFLIQ 394
            +NF+Q YY+  SFL A   ++
Sbjct: 970  FNFSQPYYYYFSFLLAEMYLR 990


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,878
Number of Sequences: 5004
Number of extensions: 44838
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)