Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0586
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600...    31   1.0  
03_02_0191 - 6270591-6271364,6271458-6272168                           30   1.8  
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042...    28   7.1  

>12_02_0188 -
           15158824-15159215,15159299-15159809,15159885-15160015,
           15160107-15160310,15160385-15161066,15161158-15161414,
           15161491-15161631,15161731-15162136
          Length = 907

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -3

Query: 339 VNFVFEC----LFHNFEIILGHINYSNYVFKNIRKVV 241
           +NF+  C     FHN     GH   +N+V K IRKVV
Sbjct: 238 INFLIYCNGIMFFHNSVDATGHSQDANFVLKEIRKVV 274


>03_02_0191 - 6270591-6271364,6271458-6272168
          Length = 494

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 174 WPVVEIAFIKIICAACLMTYIQG-YMLSRPIPVYIL 70
           W  +++  + I+C+  L+ ++   Y +SRP PVY++
Sbjct: 55  WRSLQLDLVHILCSVFLVVFVGTVYFMSRPRPVYLV 90


>01_05_0127 -
           18401461-18401464,18401868-18403876,18404060-18404237,
           18404381-18404958,18405609-18405611
          Length = 923

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 309 NFEIILGHINYS-NYVFKNIRKVVPTIHLNTHTRTICIQCMVYGRDWPVVEIAFIK-IIC 136
           N  I +G++    N  FKN+R    T  L  HT   C     YG  +P +E  ++  ++ 
Sbjct: 685 NSSISIGNLGVKGNKQFKNLRWCHVTRCLKMHTVFFCDDDWRYGNFFPSLETLWVSHLVQ 744

Query: 135 AACL 124
           A C+
Sbjct: 745 ARCI 748


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,184,965
Number of Sequences: 37544
Number of extensions: 381962
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)