BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0585 (725 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 3.6 SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 4.8 SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.8 SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 4.8 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.8 SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual 25 8.3 SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 8.3 SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 8.3 >SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual Length = 968 Score = 26.6 bits (56), Expect = 3.6 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Frame = +3 Query: 312 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 488 K + +Q LK T T S+ ST D++ LP+ ++++TN K N+N++ + Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832 Query: 489 N---NDAQITRLLK 521 + N + +L+K Sbjct: 833 SSTCNANSVNKLMK 846 >SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 26.2 bits (55), Expect = 4.8 Identities = 13/56 (23%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Frame = +3 Query: 219 DYKYGESAALNAQLIE-IPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQ 383 + ++G +A +++ LIE + + +++ +I + P+D + Q+Q + + L+ AQ+ Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQR 715 >SPAP27G11.15 |slx1||structure-specific endonuclease catalytic subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 271 Score = 26.2 bits (55), Expect = 4.8 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 96 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 191 V+A+ F+ W + R T D DF K KTI Sbjct: 68 VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99 >SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 886 Score = 26.2 bits (55), Expect = 4.8 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Frame = -1 Query: 722 DSVKHN-NTINLKGIVKRFV-CIE-----NDWRSYINL**SRHCKSVSCSSFSAFLVDFN 564 DS++H +T N++ +KR + C E ND + IN S S+SC S L++ Sbjct: 538 DSMRHVLHTANVQ--IKRLILCFEDTQQSNDGTANIN---SIVNASLSCISSFRKLIEVT 592 Query: 563 ERFLNSLTYR 534 ++FLN LT R Sbjct: 593 KKFLNELTSR 602 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 26.2 bits (55), Expect = 4.8 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%) Frame = +3 Query: 180 DKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD- 356 D K+ + + K E +N +L + K +SSL V + + +TQL E K+ Sbjct: 836 DNVQKLMHKHVNQESKVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNY 894 Query: 357 -------------PKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 497 K+LE +Q +++ +L++ K+ + +++ S+ K+ Sbjct: 895 DSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQ 954 Query: 498 AQITRLLKGESLSVSEAI 551 +I+ LK E++S S+AI Sbjct: 955 EEISN-LKEENMSQSQAI 971 >SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual Length = 230 Score = 25.4 bits (53), Expect = 8.3 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 358 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 459 LRR++R+S A PK+ NS ++ R+ MF Sbjct: 27 LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58 >SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1313 Score = 25.4 bits (53), Expect = 8.3 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 465 NMNVNKIFNNDAQITRLLKGESLSVS 542 +++ NKI N +TR LKG +LS++ Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872 >SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 747 Score = 25.4 bits (53), Expect = 8.3 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 10/74 (13%) Frame = +3 Query: 234 ESAALNAQLIEIPYKGDQSSLI--------VVLPKDKDGITQLQEALKDPKT-LETAQ-Q 383 E A + L+ I + GD ++ V LPKDK G+ +EAL T E A Q Sbjct: 513 EGVARLSHLLNIEFLGDLLQVLRELVMDDTVFLPKDKSGVQATREALLTVSTAFEIASAQ 572 Query: 384 SMYSTEVDLYLPKF 425 + +DL L F Sbjct: 573 GVGKLNLDLDLGLF 586 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,636,373 Number of Sequences: 5004 Number of extensions: 49145 Number of successful extensions: 140 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 140 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 341222980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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