Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0585
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 3.6
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 4.8
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.8
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 4.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.8
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual 25 8.3
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 8.3
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 8.3
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 312 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 488
K + +Q LK T T S+ ST D++ LP+ ++++TN K N+N++ +
Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832
Query: 489 N---NDAQITRLLK 521
+ N + +L+K
Sbjct: 833 SSTCNANSVNKLMK 846
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/56 (23%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 219 DYKYGESAALNAQLIE-IPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQ 383
+ ++G +A +++ LIE + + +++ +I + P+D + Q+Q + + L+ AQ+
Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQR 715
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 96 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 191
V+A+ F+ W + R T D DF K KTI
Sbjct: 68 VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.8
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Frame = -1
Query: 722 DSVKHN-NTINLKGIVKRFV-CIE-----NDWRSYINL**SRHCKSVSCSSFSAFLVDFN 564
DS++H +T N++ +KR + C E ND + IN S S+SC S L++
Sbjct: 538 DSMRHVLHTANVQ--IKRLILCFEDTQQSNDGTANIN---SIVNASLSCISSFRKLIEVT 592
Query: 563 ERFLNSLTYR 534
++FLN LT R
Sbjct: 593 KKFLNELTSR 602
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.8
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Frame = +3
Query: 180 DKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD- 356
D K+ + + K E +N +L + K +SSL V + + +TQL E K+
Sbjct: 836 DNVQKLMHKHVNQESKVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNY 894
Query: 357 -------------PKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 497
K+LE +Q +++ +L++ K+ + +++ S+ K+
Sbjct: 895 DSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQ 954
Query: 498 AQITRLLKGESLSVSEAI 551
+I+ LK E++S S+AI
Sbjct: 955 EEISN-LKEENMSQSQAI 971
>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 358 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 459
LRR++R+S A PK+ NS ++ R+ MF
Sbjct: 27 LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 465 NMNVNKIFNNDAQITRLLKGESLSVS 542
+++ NKI N +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 8.3
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Frame = +3
Query: 234 ESAALNAQLIEIPYKGDQSSLI--------VVLPKDKDGITQLQEALKDPKT-LETAQ-Q 383
E A + L+ I + GD ++ V LPKDK G+ +EAL T E A Q
Sbjct: 513 EGVARLSHLLNIEFLGDLLQVLRELVMDDTVFLPKDKSGVQATREALLTVSTAFEIASAQ 572
Query: 384 SMYSTEVDLYLPKF 425
+ +DL L F
Sbjct: 573 GVGKLNLDLDLGLF 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,373
Number of Sequences: 5004
Number of extensions: 49145
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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