Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0584
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    29   0.46 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    28   0.60 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   0.60 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   0.80 
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    28   0.80 
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    28   0.80 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   1.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.4  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   2.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   5.6  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   5.6  
SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|c...    25   5.6  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   5.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f...    24   9.8  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    24   9.8  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    24   9.8  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    24   9.8  

>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -1

Query: 369 DLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFA 223
           D  C   S G E P   N F N+Y R  S  +  SS   C T   L F+
Sbjct: 85  DYLCKKVSKGPESPRV-NSFHNSYSRNQSPISRKSSCVTCSTVLPLEFS 132


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -2

Query: 425 QDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 246
           ++ +RQNE  +   A  +     H +     T+ R+     H TGL   +T T   PI  
Sbjct: 60  EEKIRQNEQANTKFAFLHANDPYHPYYQHKLTEAREGKLKSHATGLSTQKTSTLARPIQK 119

Query: 245 P 243
           P
Sbjct: 120 P 120


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 274 HELQFRPLPHHAEIILRSETGPTARQT 194
           H  Q  PLP+H   +   ET PT  QT
Sbjct: 622 HNKQTNPLPYHIVYMFSFETSPTVFQT 648


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -1

Query: 402 GIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLF 229
           G  T  ++ L  + C  +SIG     T  + +N+Y     F  TN S +  +T  R F
Sbjct: 521 GSYTQTKEILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHF 578


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 445 VYSSKCHRTSFVKTRYCHKYPRFFT*LMLHIDINRHRGPRY 323
           V S+K HRT  ++  Y H  P++      H ++  H  P +
Sbjct: 72  VVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 445 VYSSKCHRTSFVKTRYCHKYPRFFT*LMLHIDINRHRGPRY 323
           V S+K HRT  ++  Y H  P++      H ++  H  P +
Sbjct: 72  VVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 182 LLSYCLACCWPGLGAKNNLRV-VRQWAELEFVFPN 283
           LLS   ACC    G + N+++ V  + E+  V+PN
Sbjct: 618 LLSLWTACCVTDEGKEKNIKIAVEIFREISIVYPN 652


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 9   RTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNKILSCWMLLNWK 155
           RT V    I +C Y+  +N+F SL ++     +  ++++   W  LN K
Sbjct: 730 RTNVLAYFIQVCDYLRELNNFASLFSIISALNSSPIHRLRKTWANLNSK 778


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 266  PVPPIASPRGD-YSSLRDRANSTPNNMTIEK 177
            P PP    + D Y +L D A  +PN MTI+K
Sbjct: 1099 PPPPAEVEKKDLYLALYDFAGRSPNEMTIKK 1129


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 174 RSIPYDISSLKASNS*GSYLIVNLQF 97
           RS P D+SS   S + GS+L  NL F
Sbjct: 478 RSSPRDLSSFSTSVNDGSFLFKNLMF 503


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 317 IVSLMHMTGLLRSETRTPVPPIASPRGDYSSLRDRANST 201
           + S++ +T  L+S T +P PP++SP    S      N +
Sbjct: 317 VSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNES 355


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -1

Query: 312  FSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPYDISSLKASN 133
            +SN  D+ +S  + ++S +   ++  LF   R    HA +   ++ +    D  SLK  N
Sbjct: 974  YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLKTKN 1033


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 117 NKILSCWMLLNWKCRTESSD 176
           ++IL  W LL W C  E+ +
Sbjct: 237 DQILDIWYLLGWNCYVEAQN 256


>SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 33  IFICTYINSINSFTSLSTLR 92
           IF+C  + S N FT L + R
Sbjct: 86  IFVCNILESCNEFTDLGSAR 105


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 333 PRCRLMSMCNISQVKNRGYL*QYLVLT 413
           P C +   CN  Q   +G+L +++V T
Sbjct: 292 PVCEIALSCNYDQTSFKGFLTRFMVYT 318


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 23/86 (26%), Positives = 34/86 (39%)
 Frame = -1

Query: 453 PSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGN 274
           PS+ T   +T   SS   I  N  +       + T I T    + +  S++Y  ASS   
Sbjct: 699 PSTFTTSFITS--SSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTST 756

Query: 273 TNSSSAHCLTTRRLFFAPRPGQQHAK 196
           T SS +   ++    F P      AK
Sbjct: 757 TTSSVSSRQSSSSSSFTPSSAISTAK 782


>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
           factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 251

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 444 STVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSIGTED 331
           STV     +P S RG+ +  RD+         S  +ED
Sbjct: 212 STVSQTASKPISLRGLSSQERDYASSAQAEGISSASED 249


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 458 YVPRRLQFQMSQ--DVLRQNEVLSQISAIFYLTYVAHRH 348
           Y+PR L    S+     R NEV+ +   I YL  + H H
Sbjct: 733 YMPRELNSNESKLRAYRRVNEVIEEFKEIPYLDPLEHMH 771


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 50  YKLNK*FYVTFYASLRNCKLTIK*DPQLLDAFKLEMSYGI 169
           YKL+  F  TF   + NC L       LLDA   +  YG+
Sbjct: 287 YKLSPFFLDTFTGDVTNCPLR---KNLLLDAIVCDPPYGV 323


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +3

Query: 153 KCRTESSDFF-YCHIVWRAVGPVSERRIISAW*GNGRN---WSSCFRT 284
           K  TE  ++  Y HI+   V  V +   IS W G G N   W S  R+
Sbjct: 42  KLMTEMFEYIVYAHIIRGLVLEVGDFAGISLWMGPGNNMDDWYSILRS 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,496
Number of Sequences: 5004
Number of extensions: 40418
Number of successful extensions: 113
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)