BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0584 (462 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4 SB_43842| Best HMM Match : RNB (HMM E-Value=0) 28 3.3 SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 4.3 SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7 SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11) 27 7.6 SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6 >SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1571 Score = 29.5 bits (63), Expect = 1.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -2 Query: 338 PRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 246 PR V+KI+ H GL+ + T T P +AS Sbjct: 820 PRFLVKKIIVFTHKKGLIMNPTGTTTPSLAS 850 >SB_43842| Best HMM Match : RNB (HMM E-Value=0) Length = 1238 Score = 28.3 bits (60), Expect = 3.3 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +2 Query: 209 WPGLGA-KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHKSGKKSR 385 W LG+ N+ R+ R+W L F ++ R + FY P +V DV+ K K Sbjct: 1159 WTNLGSTSNSWRLTRRWVTLMVDFDSDALRFWGKGYGFYEPSLAVG---DVKFKMFDKVT 1215 Query: 386 IFVTI 400 + +++ Sbjct: 1216 LQISV 1220 >SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) Length = 356 Score = 27.9 bits (59), Expect = 4.3 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Frame = -1 Query: 456 RPSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCT------STSIGTEDPGT*NRF-SNAY 298 RP+S + T RP+S+ T R F P T STS T P + + F + A Sbjct: 70 RPNSQSTFTTTARPNSQSTFTTTARPFQPTFTTTARPKSQSTSTTTARPNSLSTFTTTAR 129 Query: 297 DRASSFGNTNSSSAHCLTT 241 S+F T TT Sbjct: 130 PLQSTFTTTARPLQSTFTT 148 >SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1438 Score = 27.5 bits (58), Expect = 5.7 Identities = 10/36 (27%), Positives = 20/36 (55%) Frame = -2 Query: 365 YVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVP 258 Y AHR +SAP ++ +S+ ++ ++ + T P Sbjct: 209 YHAHRRRSAPSASIKSSISVKPLSSTVKPNSPTEAP 244 >SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11) Length = 1166 Score = 27.1 bits (57), Expect = 7.6 Identities = 15/65 (23%), Positives = 31/65 (47%) Frame = -2 Query: 443 LQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTP 264 + ++ S D++ S ++A F L Y HR + A ++S+ M + ++ + Sbjct: 80 IAYKSSSDLVTAAGGSSVLAAAFGLLYCKHRQRHARTQSEEDLLSMELMYSMQAADGLSE 139 Query: 263 VPPIA 249 +PP A Sbjct: 140 IPPPA 144 >SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 415 Score = 27.1 bits (57), Expect = 7.6 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = -1 Query: 414 SSKRGIVTNIRDFLPDLCCTSTSIGT 337 +++RGI NIR F+ ++C T+ ++ T Sbjct: 27 TNERGIWQNIRRFVVEICVTTMNLAT 52 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,258,503 Number of Sequences: 59808 Number of extensions: 296680 Number of successful extensions: 905 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 903 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 945255773 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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