Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0584
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         28   3.3  
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                28   4.3  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)                27   7.6  
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 338 PRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 246
           PR  V+KI+   H  GL+ + T T  P +AS
Sbjct: 820 PRFLVKKIIVFTHKKGLIMNPTGTTTPSLAS 850


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 209  WPGLGA-KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHKSGKKSR 385
            W  LG+  N+ R+ R+W  L   F ++  R +     FY P  +V    DV+ K   K  
Sbjct: 1159 WTNLGSTSNSWRLTRRWVTLMVDFDSDALRFWGKGYGFYEPSLAVG---DVKFKMFDKVT 1215

Query: 386  IFVTI 400
            + +++
Sbjct: 1216 LQISV 1220


>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 356

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -1

Query: 456 RPSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCT------STSIGTEDPGT*NRF-SNAY 298
           RP+S +    T RP+S+    T  R F P    T      STS  T  P + + F + A 
Sbjct: 70  RPNSQSTFTTTARPNSQSTFTTTARPFQPTFTTTARPKSQSTSTTTARPNSLSTFTTTAR 129

Query: 297 DRASSFGNTNSSSAHCLTT 241
              S+F  T        TT
Sbjct: 130 PLQSTFTTTARPLQSTFTT 148


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 365 YVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVP 258
           Y AHR +SAP   ++  +S+  ++  ++  + T  P
Sbjct: 209 YHAHRRRSAPSASIKSSISVKPLSSTVKPNSPTEAP 244


>SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)
          Length = 1166

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 443 LQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTP 264
           + ++ S D++      S ++A F L Y  HR + A       ++S+  M  +  ++  + 
Sbjct: 80  IAYKSSSDLVTAAGGSSVLAAAFGLLYCKHRQRHARTQSEEDLLSMELMYSMQAADGLSE 139

Query: 263 VPPIA 249
           +PP A
Sbjct: 140 IPPPA 144


>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 414 SSKRGIVTNIRDFLPDLCCTSTSIGT 337
           +++RGI  NIR F+ ++C T+ ++ T
Sbjct: 27  TNERGIWQNIRRFVVEICVTTMNLAT 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,503
Number of Sequences: 59808
Number of extensions: 296680
Number of successful extensions: 905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)