Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0584
(462 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23390.1 68417.m03372 expressed protein contains Pfam profi... 29 1.2
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 29 1.2
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b... 28 2.7
At1g53040.2 68414.m06006 expressed protein contains Pfam profile... 28 2.7
At1g53040.1 68414.m06005 expressed protein contains Pfam profile... 28 2.7
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 28 3.5
At1g28240.1 68414.m03466 expressed protein 28 3.5
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d... 27 4.7
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 27 6.2
At1g78740.1 68414.m09177 hypothetical protein 27 6.2
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 27 6.2
At5g26680.1 68418.m03171 endonuclease, putative similar to Swiss... 27 8.2
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 27 8.2
At1g80220.1 68414.m09388 hypothetical protein 27 8.2
At1g13610.1 68414.m01597 expressed protein ; expression supporte... 27 8.2
>At4g23390.1 68417.m03372 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 401
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 192 IVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH 305
IV+ + ++ + + W +G N + C+ T +PG +H
Sbjct: 208 IVYPGLNQNNQSHLFTYWTADGNNKTHCYNTLRPGFVH 245
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 459 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 346
+R SSS P+ +G PS+K +V NI P CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417
>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
boundaries domain protein 18 (LBD18) identical to LOB
DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
by full-length cDNA gi:17227163
Length = 262
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 339 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 217
T+ P + + + YD AS F T SSSA T +R F PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209
>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 540
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 6 IRTPVSIINIFICTYINSINSFTSLSTL 89
IR + I N+F C + N ++ FTS L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448
>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 540
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 6 IRTPVSIINIFICTYINSINSFTSLSTL 89
IR + I N+F C + N ++ FTS L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448
>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
HD-ZIP protein 4 identical to Homeobox-leucine zipper
protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953)
[Arabidopsis thaliana]
Length = 318
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 462 TIRPSSSTVPNVTGRPSSKR 403
T PS++T P V GRPS +R
Sbjct: 284 TAAPSTTTTPTVVGRPSPQR 303
>At1g28240.1 68414.m03466 expressed protein
Length = 581
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 6 IRTPVSIINIFICTYINSINSFTSLSTLR*GTV 104
+R V I N+F C + N ++ FTS + TV
Sbjct: 447 LREHVPISNLFTCLWFNEVDRFTSRDQISFSTV 479
>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
domain, PF00257: Dehydrin
Length = 185
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 450 SSSTVPNVTGRPSSKRGIVTNIRDFLP 370
+++T P T +P K+GI+ I+D LP
Sbjct: 151 ATTTGPATTDQPHEKKGILEKIKDKLP 177
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 249 GNGRNWSSCFRTKKPGHM 302
G GR S C++ +PGHM
Sbjct: 123 GGGRGGSDCYKCGEPGHM 140
>At1g78740.1 68414.m09177 hypothetical protein
Length = 306
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 224 AKNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHKSGKKSR 385
A+ +L +V LE++ ++ S + K PGS V +D+D+ SG SR
Sbjct: 190 AEKDLSIVIDAPRLEYLKLSDHQTSSFIIKN---PGSLVAVDIDINLSSGFDSR 240
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 356 VQHKSGKKSRIFVTIPR-FDEGRPVTFGTVDDEGRI 460
V S +KS +T+P EGRP+ + D+EG +
Sbjct: 176 VSRTSSEKSEEELTVPPPKSEGRPIYYHIADEEGHV 211
>At5g26680.1 68418.m03171 endonuclease, putative similar to
Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor
1) (MF1) [Homo sapiens]
Length = 453
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 128 QLLDAFKLEMSYGIERFFLLSYCLAC-CWPGLGAKNNLRVVRQWAELEFVFPNEEARSYA 304
++L+ +L M I+ +LS C C G+G + L+++RQ +E + N Y
Sbjct: 212 KILEELQLTMDQFID-LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQ 270
Query: 305 LEKRF 319
+ + +
Sbjct: 271 IPEEW 275
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 270 NSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKN-RSIPYDIS 151
N+SSA L +R AP G+Q + +++ N RS+ D S
Sbjct: 121 NNSSALVLHSRSRSLAPENGEQSSSSQNSKSNIRSVSSDTS 161
>At1g80220.1 68414.m09388 hypothetical protein
Length = 255
Score = 26.6 bits (56), Expect = 8.2
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 366 LCCTSTSIGTEDP--GT*NRFSNAYD---RASSFGNTNSSSAHCLTTRRLFFAPRPGQQH 202
L C+S+ G GT R SN + R + +N+ + HC R + +
Sbjct: 60 LTCSSSLNGCRPYMCGTSFRHSNCFKQFCRNNRKKRSNTKTLHCPLCRGEVLETKKASKT 119
Query: 201 AKQYDNRKNRSIPYD 157
A+++ N K RS P D
Sbjct: 120 ARRFMNAKPRSCPVD 134
>At1g13610.1 68414.m01597 expressed protein ; expression supported
by MPSS
Length = 351
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 309 RNDFTYLGPRCRLMSMCNISQVKN 380
RN F LG R + +CN+ VKN
Sbjct: 323 RNSFDRLGEMVRSVRLCNVDCVKN 346
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,768
Number of Sequences: 28952
Number of extensions: 205791
Number of successful extensions: 546
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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