Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0580
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    28   1.1  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   1.9  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   4.3  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   4.3  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   7.5  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   9.9  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.9  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    25   9.9  

>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -1

Query: 431 LSFVLSGAFDGIDFVFVSRLVDVVG-IIFNSQLLP*VR-PFIYQMSNDFVSSRLLFPSTL 258
           LS V +  FDGI  VF+  L    G + F++  L  +  P++ ++   F    +L+   L
Sbjct: 201 LSNVTTATFDGISNVFIGNLKSAAGNLYFSNTTLDNISVPYLTEIGQSFA---VLYSPEL 257

Query: 257 NTLMFKSI 234
            +L F ++
Sbjct: 258 TSLNFPNL 265


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 150 RLLKGYVDCLLGKGRCTPDGKALKETLPDALE 245
           RL+  Y+D LL  G     GK LKE   + L+
Sbjct: 381 RLIAKYIDYLLRVGEQASGGKPLKEVFSEILD 412


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 292 LSAPDFCFPVHLTHSCSRASGRVSFKALPSGVQRPLPRRQST*PLRSRLDS 140
           LS P+F  P   T +CS      +F  L S +        S  P  S+L+S
Sbjct: 172 LSFPEFDIPEIKTETCSNKDHLENFDYLSSSIPETSGPASSVLPSSSQLES 222


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 99  YTDKWDNINVDEILESNRLLKGYVDCLLGKGRCTPDGKALKETLPDAL 242
           +  K   +  +E+ E  + L+GYV+ +L K         + ET PD +
Sbjct: 850 HAQKESEVKYNELNEQVKTLEGYVETVLEKFNDLKIENKVPETAPDVV 897


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 315 KRPDLWKELAVKYDPDNIYQARYKDKIDAVKG 410
           + PD  +E   KY  D+ Y + +K  +DA +G
Sbjct: 346 RSPDSDEEKVYKYPNDDPYYSEFKIFLDAAEG 377


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 204 DGKALKETLPDALEHECVKCTGK 272
           DG        +ALEH CV+C  K
Sbjct: 357 DGNERLVKFANALEHACVRCVEK 379


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 53  YYDQYFHCRLLIIYPV 6
           +YD YF CR  ++ PV
Sbjct: 305 FYDVYFQCRTRLLKPV 320


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 84  RPESTYTDKWDNINVDEILESNRL 155
           RP S  TDK  N +++ +L  NR+
Sbjct: 236 RPLSASTDKQSNTSLNRVLGKNRM 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,404
Number of Sequences: 5004
Number of extensions: 40277
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)