Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0579
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35780.1 68415.m04390 serine carboxypeptidase S10 family prot...    29   1.7  
At4g24680.1 68417.m03533 expressed protein                             29   2.3  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    29   3.0  
At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family...    29   3.0  
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    28   4.0  
At2g01070.1 68415.m00013 expressed protein similar to membrane p...    27   7.0  
At3g59080.1 68416.m06586 aspartyl protease family protein contai...    27   9.2  
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra...    27   9.2  

>At2g35780.1 68415.m04390 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 452

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -2

Query: 485 SC*ISHQRKSRIYRIP*DPRERS-SHFDEY-----SGGKVEVFEAWVSESSP 348
           SC    Q K RI+ +P +P + S SHF  Y     S G+   +  W++ES P
Sbjct: 19  SCSRHEQEKDRIFHLPGEPNDVSFSHFSGYITVNESAGRALFY--WLTESPP 68


>At4g24680.1 68417.m03533 expressed protein
          Length = 1480

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 498 MAWSTTTRPASALGLMKLKRRDVALQR 578
           +AW + +RP+SA G+    +  VALQR
Sbjct: 109 VAWDSNSRPSSASGVFPSNQPSVALQR 135


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 326 KCDLPFNLDCSQRP-KLQTPQP---SLHCIRQNGYFSHEDPKEC-GKFYFC 463
           +C LPF++DC  RP +L+ P     S H +      S + P  C GK   C
Sbjct: 186 ECQLPFHVDCVWRPSELKHPSEVNHSYHSLHPLKLLSGQLPDNCDGKCRLC 236


>At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family
           protein Common family member:At3g26910 [Arabidopsis
           thaliana]
          Length = 623

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = +3

Query: 105 QHSHLKPE-RSLPTPQLVPEKRARLTRRSRTYVL--KMDTLLTPNSVTN--IMNAGVVI* 269
           Q + L PE R+ P  + +   R+ LTR+  TY L   ++T  +P+S T+    N G    
Sbjct: 330 QSAPLFPENRTTPPSEKLLRMRSTLTRKFNTYALPTPVETTRSPSSTTSPGHKNVGSSNP 389

Query: 270 LRNFAQTVWCSTTTVHRKRNVIYLSTWTALRDPSFKHLN 386
            +   + +W S+    R    +   +  AL++   +  N
Sbjct: 390 TKAITKQIWYSSPLETRGPAKVSSRSMVALKEQVLRESN 428


>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 290 GMVFNDYSPQEEKCDLPFNLDCSQRP 367
           G +  ++S + ++CDL F++DC+ RP
Sbjct: 141 GKLSYEFSYKCQECDLAFHVDCAWRP 166


>At2g01070.1 68415.m00013 expressed protein similar to membrane
           protein PTM1 precursor isolog GB:AAB65479
          Length = 496

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 500 GLVYNDKTGICTWPDEAKKKGCGAAEV 580
           G  Y  +  IC  PD AK +GC   E+
Sbjct: 98  GSAYGGQRSICCTPDLAKLQGCKQGEI 124


>At3g59080.1 68416.m06586 aspartyl protease family protein contains
           similarity to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 535

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 386 PSLHCIRQNGYFSHEDPKECGKFYFCVDGKFNMITCPD 499
           P   C +QNG F         K   C D + N+++ PD
Sbjct: 200 PCYDCFQQNGAFYDPKASASYKNITCNDQRCNLVSSPD 237


>At2g11810.1 68415.m01269 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase type C
           [gi:9927295] from Arabidopsis thaliana, similar to MGDG
           synthase type A [gi:9884651] from Glycine max
          Length = 465

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 260 GDIIEKL-CPDGMVFNDYSPQEEKCDLPFNLD 352
           G I E L C   ++ NDY P +EK ++P+ +D
Sbjct: 365 GTIAEALICGLPIILNDYIPGQEKGNVPYVVD 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,424
Number of Sequences: 28952
Number of extensions: 275378
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)