Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0578
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   2.4  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    26   7.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   7.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.9  

>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 317 CNNCITLTQNCNSMTKRFKYYYFV*SNFYWIRAV 216
           C NCI+ T+N +    R K++Y   +  Y++ A+
Sbjct: 544 CYNCISGTRNISRQYSRDKFHYNQRTTIYYLVAI 577


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 192 APL*HFCNFYGP-IHNF*FNKI 130
           APL  F NF GP IH   FNK+
Sbjct: 364 APLTDFANFVGPVIHQASFNKL 385


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 556 LDQKAKIDIQPVAKSPMELK 497
           LD+KA++DI P  KS ME K
Sbjct: 151 LDKKAEVDIIPFDKSVMEPK 170


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = -2

Query: 646 NLSYFKNNTYIVNDEILQ*NSTFFKYLITFLDQKAKIDIQPVAKSPMELKLQSVTLTHYS 467
           NL+    N    N++ +  N+T  +  I+ LD   K++ +PV+   ++  ++S T    +
Sbjct: 255 NLTSEAGNEKEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSNDNIKANIESSTTVDRA 314

Query: 466 SGEL 455
           S +L
Sbjct: 315 SSQL 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,365
Number of Sequences: 5004
Number of extensions: 61491
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)