Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0578
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38590| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  29   3.5  
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)             29   6.1  
SB_10560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)                  28   8.0  

>SB_38590| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 284

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 552 SKNVIKYLKKVLFYCRISSFTIYVLFLKYDKFQIEIICCSQIFCRHY*LMGYIF 713
           S   + Y   +   CR +++ + V +L Y+    ++ C   +    Y L+GY++
Sbjct: 79  SVQYLSYFGVIPIVCRYNTYPMSVQYLSYEYHAGKVFCFQVLEVDFYTLLGYVY 132


>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
          Length = 1851

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -1

Query: 281  SMTKRFKYYYFV*SNFYWIRAVHPKLFCAMPHCNISAIFMAPYIIFNLTKLFVHVRNI 108
            S+TK+ ++   +  + +W++  + K+F A+     S   MAP  I +L K   H R++
Sbjct: 929  SLTKKTEHVTPILQDLHWLQVKYRKIFKALLAVFKSLNEMAPLYIKDLCKYKTHSRSL 986


>SB_10560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 507 IGLLATGC-ISIFAF*SKNVIKYLKKVLFYCR-ISSFTIYVLFLKYDK 644
           IGL  TG   SIF   ++N +KY K VLF  R +    I  L L  +K
Sbjct: 588 IGLAETGKKASIFVIYARNSVKYRKNVLFDTRGLQDLKIRALALSRNK 635


>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
          Length = 248

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 594 CRISSFTIYVLFLKYDKFQIEI 659
           CR+ +FT++   LKY  F +E+
Sbjct: 58  CRVPAFTVFSCLLKYSHFDLEM 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,751,923
Number of Sequences: 59808
Number of extensions: 410131
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)