Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0578
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical ...    30   1.7  
AL021488-4|CAA16363.2|  531|Caenorhabditis elegans Hypothetical ...    29   5.3  
Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    28   9.3  

>AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical
           protein Y106G6H.1 protein.
          Length = 453

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 350 LHYHFARIIRFCNNCITLTQNCNSMTKRFKYYYFV*SNFYWIRAVHPKLFCAMPH 186
           LHY+  R    CNN IT   + NS+T+   + Y     F  +   HP  FC++ H
Sbjct: 176 LHYYMKRESEVCNNQIT---DLNSITEDQLFGY-----FSTLATAHPGPFCSLCH 222


>AL021488-4|CAA16363.2|  531|Caenorhabditis elegans Hypothetical
           protein Y45F10A.7a protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 127 NNFVKLKIMYGAIKIAEMLQWGMAQKSL 210
           NN VKLK+   + K  E+++W M QK +
Sbjct: 159 NNRVKLKVYRNSFKGEELVEWLMRQKGI 186


>Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical
           protein T05C12.4 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 308 CITLTQNCNSMTKRFKYYYFV*SNFYW 228
           CI+L     +M K  KYY+ + S FYW
Sbjct: 563 CISLLPCVFAMFKLVKYYFRMSSEFYW 589


>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 670 EQQIISI*NLSYFKNNTYIVNDEILQ*NSTFFKYL 566
           +++I+   N+S+  N TYI  DEIL  +S    YL
Sbjct: 66  DREILVNPNISFPNNGTYITLDEILDPDSLMIWYL 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,925,971
Number of Sequences: 27780
Number of extensions: 339786
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)