BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0577 (760 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 41 2e-04 SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 3.8 SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 26 6.7 SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 8.9 >SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual Length = 548 Score = 41.1 bits (92), Expect = 2e-04 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +3 Query: 534 QFQDGSIHNEPVLGYRAGSRERQDLIEELKRT-ASVIEDVPIVIAGKNITEGEPRYQVMP 710 +F+ +I NEP Y S +R+ +++ K A + +P++I GK + Q P Sbjct: 6 EFKLPAIKNEPPKHYGPNSADREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGEQRCP 65 Query: 711 HDHSKKIGKYYYASEK 758 +H K + +Y+ A K Sbjct: 66 FEHKKVVARYHRAGAK 81 >SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual Length = 618 Score = 26.6 bits (56), Expect = 3.8 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Frame = +3 Query: 489 VRSLERTLSSV--VDLPQFQDGSIHNEPVLGYRA 584 V + ++LS++ DLP F++ IH+ PV YR+ Sbjct: 5 VDQISKSLSTLGLQDLPVFREADIHHNPVDVYRS 38 >SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 516 Score = 25.8 bits (54), Expect = 6.7 Identities = 10/38 (26%), Positives = 21/38 (55%) Frame = -1 Query: 196 MLLILKMRCIFNFSVSIENSFK*VYKTRYYCKMFANFP 83 M++ + + CIF+ +V+ + V R++C F + P Sbjct: 143 MIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFFGSSP 180 >SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 315 Score = 25.4 bits (53), Expect = 8.9 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Frame = +3 Query: 594 ERQDL--IEELKRTASVIEDVPIVIAGKNITEGE 689 +RQD+ + ELKR S++ED+ I AG + GE Sbjct: 147 QRQDVFTVHELKRIESILEDL-INAAGASHKHGE 179 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,051,952 Number of Sequences: 5004 Number of extensions: 60403 Number of successful extensions: 145 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 363302114 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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