BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0577 (760 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF016672-3|AAT92072.1| 394|Caenorhabditis elegans Aldehyde dehy... 60 2e-09 AF016672-2|AAO38633.1| 512|Caenorhabditis elegans Aldehyde dehy... 60 2e-09 AF016672-1|AAB66116.3| 563|Caenorhabditis elegans Aldehyde dehy... 60 2e-09 U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein. 29 2.7 AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated... 29 2.7 AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated... 29 2.7 Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical pr... 28 6.3 Z82282-7|CAB05280.2| 584|Caenorhabditis elegans Hypothetical pr... 28 6.3 U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 28 6.3 AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 6.3 U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 28 8.3 AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 28 8.3 AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 28 8.3 AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 8.3 AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 28 8.3 >AF016672-3|AAT92072.1| 394|Caenorhabditis elegans Aldehyde dehydrogenase protein6, isoform c protein. Length = 394 Score = 60.1 bits (139), Expect = 2e-09 Identities = 30/65 (46%), Positives = 39/65 (60%) Frame = +3 Query: 558 NEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDHSKKIGK 737 NEP+L YR GS+ERQDL L + I +VP+ I K IT + QV+P DH + K Sbjct: 34 NEPILEYRKGSKERQDLEAALAFYSKNITEVPLRIGDKKITNKLEQKQVIPSDHRSTLAK 93 Query: 738 YYYAS 752 Y YA+ Sbjct: 94 YTYAT 98 >AF016672-2|AAO38633.1| 512|Caenorhabditis elegans Aldehyde dehydrogenase protein6, isoform b protein. Length = 512 Score = 60.1 bits (139), Expect = 2e-09 Identities = 30/65 (46%), Positives = 39/65 (60%) Frame = +3 Query: 558 NEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDHSKKIGK 737 NEP+L YR GS+ERQDL L + I +VP+ I K IT + QV+P DH + K Sbjct: 34 NEPILEYRKGSKERQDLEAALAFYSKNITEVPLRIGDKKITNKLEQKQVIPSDHRSTLAK 93 Query: 738 YYYAS 752 Y YA+ Sbjct: 94 YTYAT 98 >AF016672-1|AAB66116.3| 563|Caenorhabditis elegans Aldehyde dehydrogenase protein6, isoform a protein. Length = 563 Score = 60.1 bits (139), Expect = 2e-09 Identities = 30/65 (46%), Positives = 39/65 (60%) Frame = +3 Query: 558 NEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDHSKKIGK 737 NEP+L YR GS+ERQDL L + I +VP+ I K IT + QV+P DH + K Sbjct: 34 NEPILEYRKGSKERQDLEAALAFYSKNITEVPLRIGDKKITNKLEQKQVIPSDHRSTLAK 93 Query: 738 YYYAS 752 Y YA+ Sbjct: 94 YTYAT 98 >U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein. Length = 565 Score = 29.5 bits (63), Expect = 2.7 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = +3 Query: 513 SSVVDLPQFQDGSIHNEPVLGYRAGSRERQ-DLIEELK-RTASVIEDVPIVIAGKNITEG 686 SS + PQ Q + E Y +G RQ + +E L+ TAS ++PI GKN T Sbjct: 25 SSSIGPPQQQSAKLFPEHF--YPSGLSPRQSEALERLRPNTASRERNIPIQFTGKNPTTN 82 Query: 687 E--PRYQVMPH 713 Y+ +PH Sbjct: 83 SALEEYKPVPH 93 >AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated protein 87, isoform c protein. Length = 544 Score = 29.5 bits (63), Expect = 2.7 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = +3 Query: 513 SSVVDLPQFQDGSIHNEPVLGYRAGSRERQ-DLIEELK-RTASVIEDVPIVIAGKNITEG 686 SS + PQ Q + E Y +G RQ + +E L+ TAS ++PI GKN T Sbjct: 4 SSSIGPPQQQSAKLFPEHF--YPSGLSPRQSEALERLRPNTASRERNIPIQFTGKNPTTN 61 Query: 687 E--PRYQVMPH 713 Y+ +PH Sbjct: 62 SALEEYKPVPH 72 >AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated protein 87, isoform a protein. Length = 565 Score = 29.5 bits (63), Expect = 2.7 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = +3 Query: 513 SSVVDLPQFQDGSIHNEPVLGYRAGSRERQ-DLIEELK-RTASVIEDVPIVIAGKNITEG 686 SS + PQ Q + E Y +G RQ + +E L+ TAS ++PI GKN T Sbjct: 25 SSSIGPPQQQSAKLFPEHF--YPSGLSPRQSEALERLRPNTASRERNIPIQFTGKNPTTN 82 Query: 687 E--PRYQVMPH 713 Y+ +PH Sbjct: 83 SALEEYKPVPH 93 >Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical protein T07G12.11 protein. Length = 575 Score = 28.3 bits (60), Expect = 6.3 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 600 QDLIEELKRTASVIEDVPIVIAGKNITEGEPRY 698 QDL+EE+ +T + ++ PI+++ G PR+ Sbjct: 135 QDLLEEMVQTVADVDQAPILLSTTLANIGVPRF 167 >Z82282-7|CAB05280.2| 584|Caenorhabditis elegans Hypothetical protein T07G12.10 protein. Length = 584 Score = 28.3 bits (60), Expect = 6.3 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 600 QDLIEELKRTASVIEDVPIVIAGKNITEGEPRY 698 QDL+EE+ +T + ++ PI+++ G PR+ Sbjct: 136 QDLLEEMVQTVADVDQAPILLSTTLANIGVPRF 168 >U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical protein C10H11.1 protein. Length = 918 Score = 28.3 bits (60), Expect = 6.3 Identities = 11/39 (28%), Positives = 24/39 (61%) Frame = +3 Query: 594 ERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMP 710 ERQ +++ + +A+V++D+PI + + + + R Q P Sbjct: 51 ERQPAVQQRRTSANVLQDLPIFQRAQQLHQQQQRPQSFP 89 >AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical protein F39C12.1 protein. Length = 5105 Score = 28.3 bits (60), Expect = 6.3 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +1 Query: 202 FVENFNAATPFS-RNKKEYEIVKVTALFESN-KFFDCRGRTR 321 F+ENF TPFS R + E K TA ++ N KF GR R Sbjct: 1038 FMENFEGDTPFSQRAECPIEEKKQTAKYDENDKFMFPLGRLR 1079 >U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 preproprotein protein. Length = 1042 Score = 27.9 bits (59), Expect = 8.3 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Frame = +3 Query: 453 SVMLTIWARIGRV---RSLERTLSSVVDLPQFQDGSIHNEPVLGYRAGSRERQDLIEELK 623 +V + +W + R+ +ERTLS VVD I + + + AGS Q++ Sbjct: 275 AVYVELWTDVQRIDLWEDIERTLSGVVDYASGHIYHIQKDASILFTAGSFANQEVSNAAI 334 Query: 624 RTASVIEDVPIV 659 R+ IV Sbjct: 335 RSICTARSAVIV 346 >AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical protein Y37D8A.13 protein. Length = 1042 Score = 27.9 bits (59), Expect = 8.3 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Frame = +3 Query: 453 SVMLTIWARIGRV---RSLERTLSSVVDLPQFQDGSIHNEPVLGYRAGSRERQDLIEELK 623 +V + +W + R+ +ERTLS VVD I + + + AGS Q++ Sbjct: 275 AVYVELWTDVQRIDLWEDIERTLSGVVDYASGHIYHIQKDASILFTAGSFANQEVSNAAI 334 Query: 624 RTASVIEDVPIV 659 R+ IV Sbjct: 335 RSICTARSAVIV 346 >AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell migration protein 30 protein. Length = 787 Score = 27.9 bits (59), Expect = 8.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 59 CAVKVRRTREICEHFAIISCFINLLEAI 142 CAV + E+CE+F + I+LL+AI Sbjct: 304 CAVTHKLVAEVCEYFDNLDQIIDLLQAI 331 >AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear anchorage protein1 protein. Length = 8545 Score = 27.9 bits (59), Expect = 8.3 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +3 Query: 591 RERQDLIEELKRTASVIEDVPIVIAGKNITEG-EPRYQVMPHDHSKKI 731 ++ DL E L + SVI D+P N+ +G E +P + S KI Sbjct: 2404 KQESDLAEALLQELSVIYDMPTSTIDLNMLQGIEDNLNSLPAEESDKI 2451 Score = 27.9 bits (59), Expect = 8.3 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +3 Query: 591 RERQDLIEELKRTASVIEDVPIVIAGKNITEG-EPRYQVMPHDHSKKI 731 ++ DL E L + SVI D+P N+ +G E +P + S KI Sbjct: 2462 KQESDLAEALLQELSVIYDMPTSTIDLNMLQGIEDNLNSLPAEESDKI 2509 >AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. Length = 787 Score = 27.9 bits (59), Expect = 8.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 59 CAVKVRRTREICEHFAIISCFINLLEAI 142 CAV + E+CE+F + I+LL+AI Sbjct: 304 CAVTHKLVAEVCEYFDNLDQIIDLLQAI 331 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,994,744 Number of Sequences: 27780 Number of extensions: 342448 Number of successful extensions: 858 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 805 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 858 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1809061256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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