BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0570 (383 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 64 5e-12 SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 5.4 SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 25 5.4 SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 24 9.4 >SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 537 Score = 64.5 bits (150), Expect = 5e-12 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Frame = +3 Query: 93 ELGNPGS--LIGDDQIYNTIVTSHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 266 EL PGS L G+ Q+YN +++H N LVPL++GAPD+A+PR+ Sbjct: 45 ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104 Query: 267 NNIRFXXXXXXXXXXXXXXIV*NGA*TG*TVYPPLSS 377 NN F + G G TVYPPLSS Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSS 141 >SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 782 Score = 24.6 bits (51), Expect = 5.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -3 Query: 105 DFLIQLELKVLKMFQL 58 DFLIQL+ KV FQL Sbjct: 609 DFLIQLKSKVFNRFQL 624 >SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 24.6 bits (51), Expect = 5.4 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = -2 Query: 346 VHAPFYTILLEINNIREGGRS--QNLILFI 263 + P YT L E+N +R+ RS +N+I F+ Sbjct: 45 IKKPAYTFLQEVNILRQLSRSRHRNIIHFV 74 >SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosaccharomyces pombe|chr 2|||Manual Length = 402 Score = 23.8 bits (49), Expect = 9.4 Identities = 9/28 (32%), Positives = 15/28 (53%) Frame = +2 Query: 278 ILTPTPLPYIINFKKNCIKWCMNRMNSL 361 I T T PY+ ++ +KW MN++ Sbjct: 222 IFTCTETPYVSGTDQSLLKWKPKEMNTI 249 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,307,697 Number of Sequences: 5004 Number of extensions: 19802 Number of successful extensions: 42 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 41 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 126307516 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -