Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0570
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    64   5e-12
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   5.4  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   5.4  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    24   9.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 64.5 bits (150), Expect = 5e-12
 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +3

Query: 93  ELGNPGS--LIGDDQIYNTIVTSHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 266
           EL  PGS  L G+ Q+YN  +++H                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 267 NNIRFXXXXXXXXXXXXXXIV*NGA*TG*TVYPPLSS 377
           NN  F              +   G   G TVYPPLSS
Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSS 141


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 105 DFLIQLELKVLKMFQL 58
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 346 VHAPFYTILLEINNIREGGRS--QNLILFI 263
           +  P YT L E+N +R+  RS  +N+I F+
Sbjct: 45  IKKPAYTFLQEVNILRQLSRSRHRNIIHFV 74


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 278 ILTPTPLPYIINFKKNCIKWCMNRMNSL 361
           I T T  PY+    ++ +KW    MN++
Sbjct: 222 IFTCTETPYVSGTDQSLLKWKPKEMNTI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,697
Number of Sequences: 5004
Number of extensions: 19802
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)