Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0570
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)                      28   3.0  
SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)                 27   5.2  
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              27   6.9  
SB_30837| Best HMM Match : rve (HMM E-Value=3.6e-18)                   27   6.9  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              26   9.2  
SB_40323| Best HMM Match : zf-C3HC4 (HMM E-Value=0.42)                 26   9.2  

>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
          Length = 414

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 295 GGRSQNLILFIRGNAISGAPSI 230
           GG S+NLI F  G  I G PS+
Sbjct: 99  GGESKNLINFALGQDIGGVPSV 120


>SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)
          Length = 544

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 316 EINNIREGGRSQNLILFIRGNAISGAPSIRGTN 218
           EI N+ + G   ++   ++G+ I+ AP+IRGT+
Sbjct: 424 EIVNVTDDGGVDHVAGRVKGHVIAIAPAIRGTD 456


>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 830

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 265 IRGNAISGAPSIRGTNQFPNPP 200
           + GN  S AP I G + FP PP
Sbjct: 335 LSGNLASTAPVISGQSSFPAPP 356


>SB_30837| Best HMM Match : rve (HMM E-Value=3.6e-18)
          Length = 474

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 292 PPPLYY*FQEELYKMVHEQDEQFTP 366
           PP  Y  F E++   +H+ D QF P
Sbjct: 283 PPNTYAHFSEQIPNRIHQSDLQFLP 307


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 106 GFPNSARIKSLKDVPIIPDQIPKIKYNVPNI 14
           G P +  I S +  PI P+  P +  NVPNI
Sbjct: 146 GLPGNTGITSSESFPI-PENSPFVPRNVPNI 175


>SB_40323| Best HMM Match : zf-C3HC4 (HMM E-Value=0.42)
          Length = 495

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 284 TPTPLPYIINFKKNCIKWCMN 346
           T TPL YI  +++ CI W  N
Sbjct: 223 TLTPLDYIQAYRRACIAWTYN 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,206,704
Number of Sequences: 59808
Number of extensions: 131598
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)