Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0570
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30550.1 68414.m03737 expressed protein similar to PIMT (GI:1...    28   2.5  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    27   4.3  
At2g16060.1 68415.m01841 non-symbiotic hemoglobin 1 (HB1) (GLB1)...    27   4.3  

>At1g30550.1 68414.m03737 expressed protein similar to PIMT
           (GI:15127914) [Mus musculus]; similar to hypothetical
           protein GB:AAF19758 GI:6634778 from [Arabidopsis
           thaliana]
          Length = 391

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 325 ILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPP 200
           I L +NN +  G + N I F+ G+ +  APS++G   F +PP
Sbjct: 82  IALAMNNAKVYGVA-NRIDFVTGDFMQLAPSLKGDVLFLSPP 122


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 371 KWGVNCSSCSCTIL 330
           KW +NC+ CSC +L
Sbjct: 755 KWKLNCNLCSCIVL 768


>At2g16060.1 68415.m01841 non-symbiotic hemoglobin 1 (HB1) (GLB1)
           identical to SP|O24520 Non-symbiotic hemoglobin 1 (Hb1)
           (ARAth GLB1) {Arabidopsis thaliana}
          Length = 160

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 76  LKDVPIIPDQIPKIKYNVPNIFMIC 2
           L+D PI  +Q PK+K +  ++F++C
Sbjct: 53  LRDSPIPAEQNPKLKPHAMSVFVMC 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,705,207
Number of Sequences: 28952
Number of extensions: 102318
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)