Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0558
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    25   3.9  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   5.1  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    25   5.1  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.9  

>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 217 IKFQKLWRPIVRNVLINRSRWRNNLRKELRRHTRSYGTSSLLFTTLKE 360
           I FQ L R +VR  + +++      RK++ +     GTS  LF ++ E
Sbjct: 88  INFQLLVRNVVRYAICSQTSHNTITRKDIVQKAFPEGTSRNLFQSVFE 135


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 216 DKIPEALETHCAKCTDKQKQMAKQL-AQGIKKTHPELWDEF 335
           DKI +++E H +K    Q++  +QL  +  +K +P++  +F
Sbjct: 90  DKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQF 130


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 244 IVRNVLINRSRWRNNLRKELRRHTRSYGTSSLLFT 348
           IV  V  NR+R  ++++  LR H  S  T   LF+
Sbjct: 128 IVEAVTDNRARAASSIKHILRNHGASLSTVKFLFS 162


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +3

Query: 192 TAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDEF 335
           + EL+ IK+   + +ETHCA     + ++ +  A+ +K+    L ++F
Sbjct: 295 STELESIKEASRKEMETHCATIQTLENEVKE--ARKVKEESLTLANKF 340


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 380 FERSLIFSLRVVKSNELVP*LRVCLLNSLRKL 285
           F +S++  L V  SNE++   R+CLL    KL
Sbjct: 86  FVKSIVGILEVDASNEILCFRRICLLCVFYKL 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,086
Number of Sequences: 5004
Number of extensions: 34183
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)