Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0558
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0594 + 25349612-25352530 28 2.9
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 28 3.8
11_06_0567 - 25038537-25038957,25039059-25039252 28 3.8
02_01_0065 - 477465-477512,477593-477685,477777-478316,478667-47... 28 3.8
01_06_0495 - 29779499-29781325 28 3.8
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 27 6.6
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587... 27 8.7
03_02_0013 - 4921925-4922077,4922176-4922252,4922360-4922445,492... 27 8.7
02_01_0679 - 5048653-5051394 27 8.7
>11_06_0594 + 25349612-25352530
Length = 972
Score = 28.3 bits (60), Expect = 2.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 280 AICFCLSVHFAQWVSKASGILSLIF 206
++CFC +H + W+S A +L+ +
Sbjct: 426 SLCFCSPLHLSSWLSNAEKMLTFCY 450
>12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 159 YTKC-LLNEGPCTAELKKIKDKIPEALETHCAKCTDKQ-KQMAKQLA--QGIKK 308
+ +C LL E A KK++DKI + AK D+ Q+A+ LA G+KK
Sbjct: 935 FEECYLLVEEALHAVSKKVEDKIKQTYSDGIAKSNDQSTSQLAQNLAHVSGLKK 988
>11_06_0567 - 25038537-25038957,25039059-25039252
Length = 204
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 295 CASCFAICFCLSVHFAQWVSKASGILSLI 209
C + A FC VH A +VS A+G+ L+
Sbjct: 135 CTTAAAGNFCNQVHIAMYVSLAAGVALLV 163
>02_01_0065 -
477465-477512,477593-477685,477777-478316,478667-478670,
479494-480063,480167-480204
Length = 430
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 159 YTKC-LLNEGPCTAELKKIKDKIPEALETHCAKCTDKQ-KQMAKQLA--QGIKK 308
+ +C LL E A KK++DKI + AK D+ Q+A+ LA G+KK
Sbjct: 306 FEECYLLVEEALHAVSKKVEDKIKQTYSDGIAKSNDQSTSQLAQNLAHVSGLKK 359
>01_06_0495 - 29779499-29781325
Length = 608
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 210 IKDKIP-EALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDEFITFYHPQGKYQTSFKDF 386
+KD IP L T +K D K A++L G+ + W+ I Y G+YQ + + F
Sbjct: 148 VKDPIPMNCLITGYSKSGDVVK--ARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3
Query: 130 TSEASKLSSIGSYLS*ASTAKNRPRKTNSSFILKFSTRF 14
T + +SSI SY S ST++NR K N S +L ST +
Sbjct: 181 TESSMDMSSILSYQSNNSTSQNRGLK-NFSLLLSLSTLY 218
>07_03_1526 +
27456426-27456700,27457936-27458023,27458129-27458725,
27458731-27460056,27460283-27460729
Length = 910
Score = 26.6 bits (56), Expect = 8.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -3
Query: 313 CVFLIPCASCFAICF 269
C++++ C SC+A CF
Sbjct: 835 CIYMMECNSCYANCF 849
>03_02_0013 -
4921925-4922077,4922176-4922252,4922360-4922445,
4922527-4922720,4922829-4923115,4923219-4923345,
4923586-4923816,4923982-4924047,4925300-4925474,
4925563-4925770,4925886-4925934,4926249-4926578
Length = 660
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 244 WVSKASGILSLIFFNSAVQGPSFSKHLV*DLRSLSL-LKTSEASKLSSIGSY 92
W+S S +LS+I +AV KH V ++ + L S AS+L G Y
Sbjct: 285 WLSAISPLLSVILSTAAVYATRADKHGVKIIQRVHAGLNPSSASQLRLSGPY 336
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 437 MYLLNKLKYCFIYLRL---KKIFERSLIFSLRVVK 342
MYL LK CF+Y + IF+R L+ L +V+
Sbjct: 421 MYLPRHLKNCFLYCSMFPQDYIFKRELLIKLWIVE 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,316,672
Number of Sequences: 37544
Number of extensions: 188512
Number of successful extensions: 509
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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