Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0558
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi...    30   0.59 
At5g11100.1 68418.m01296 C2 domain-containing protein similar to...    28   2.4  
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro...    28   3.2  
At5g63830.1 68418.m08012 zinc finger (HIT type) family protein c...    27   4.2  
At2g36570.1 68415.m04485 leucine-rich repeat transmembrane prote...    27   4.2  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    27   4.2  
At5g62650.1 68418.m07863 expressed protein                             27   5.5  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   5.5  
At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2 (G...    27   5.5  
At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family pr...    27   7.3  
At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6) al...    27   7.3  
At2g37070.1 68415.m04549 expressed protein                             27   7.3  
At5g53080.1 68418.m06594 kinesin light chain-related low similar...    26   9.7  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    26   9.7  
At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CH...    26   9.7  
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr...    26   9.7  
At3g09250.1 68416.m01099 expressed protein                             26   9.7  

>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 492

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 261 DKQKQMAKQLAQGIKKTHPELWDEFITFYHPQGKYQTSFK 380
           +K + M + LA+  K T PE W+   T Y  +G  + +FK
Sbjct: 354 EKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFK 393


>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 574

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 84  QDKYEPIDDSFDASEVLSNERLLKSYTKCLLNEGPCTAELKKIKDKIPEA 233
           QD  + +   F  S V+ ++R   SY+KCLLN      EL+KI   + EA
Sbjct: 48  QDSRKLLPGDFYPSWVVFSQRQKLSYSKCLLNW--LNLELEKIWPYVNEA 95


>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
           protein contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 362

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 153 KSYTKCLLNEGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 332
           K Y + +LN     AEL+K+K+K    L  +    +        Q   GIKKT    W++
Sbjct: 298 KVYCEQILNSD-LKAELEKLKEK-EYTLSDYYYGSSSSNYPTYTQRDDGIKKTSKSFWNK 355

Query: 333 FIT 341
           +++
Sbjct: 356 YLS 358


>At5g63830.1 68418.m08012 zinc finger (HIT type) family protein
           contains Pfam profile: PF04438 HIT zinc finger
          Length = 343

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/56 (21%), Positives = 29/56 (51%)
 Frame = -3

Query: 283 FAICFCLSVHFAQWVSKASGILSLIFFNSAVQGPSFSKHLV*DLRSLSLLKTSEAS 116
           ++ CF L ++  +W S + G  +++   S+V G +     + ++ S  L +T  ++
Sbjct: 163 YSYCFTLRIYNGEWQSDSLGAATMVLTVSSVLGHNGQPETIKEVLSFCLEQTCSSA 218


>At2g36570.1 68415.m04485 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 672

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 IDDSFDASEVLSNERLLKSYTKCLLNEGPCTAELKKIKDKIP 227
           +DD   AS  +  +  L +  K +L++G  T  +K++KD  P
Sbjct: 352 LDDLLKASAEMLGKGSLGTVYKAVLDDGSTTVAVKRLKDANP 393


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 135 SNERLLKSYTKCLLNEGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTH 314
           S E+ +   TK LL    C  E+KK KD++ +  E    K   + ++  K+  + +K+T 
Sbjct: 450 SYEKTVVEATKMLLTAKKCVVEMKKEKDEMAKEKEEVEKKLEGQVREEEKE-KEKLKETL 508

Query: 315 PELWDE 332
             L +E
Sbjct: 509 LGLGEE 514


>At5g62650.1 68418.m07863 expressed protein
          Length = 529

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 84  QDKYEPIDDSFDASEVLSNERLLKSYTKCLLN--EGPCTAELKKIKDKIPEALE 239
           Q K   + DSF+     S +R   S T+CL +  E   +A L +++D  P   E
Sbjct: 344 QPKLPYLVDSFERRSAFSIQRASGSATRCLGDSVEADTSASLLRVEDDSPSEAE 397


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 96   EPIDDSFDASEVLSNERLLKSYTKCLLNEGPCT 194
            EP+D     + V+S+  L+ SY +CL ++G  T
Sbjct: 2496 EPLDTPTMNNVVMSSVELIYSYAECLASQGKDT 2528


>At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2
           (GI:20249) [Oryza sativa]
          Length = 314

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 108 DSFDASEVLSNERLLKSYTKCLLNEGP--CTAELKKIKDKIPEALETHCAKCTDKQKQMA 281
           D  ++ E L++  + KS T  +  E    C A+  ++K+K PEA        T ++++  
Sbjct: 178 DRRESPEKLNSTPVAKSVTDVIDKEKQEACVADQGRVKEKQPEAANVE-GGSTSQEERKR 236

Query: 282 KQLAQGIKKTHPE 320
           K+ + G K+   E
Sbjct: 237 KRTSFGEKEEEEE 249


>At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 651

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 105 DDSFDASEVLSNERLLKSYTKCLLNEGPCTAELKKIKDKIPEALE 239
           D S  A+ ++S  R    YTK ++ EG     LK +K+  PE  E
Sbjct: 163 DRSDAAASLVSLARDNDRYTKLIIEEGGVVPLLKLLKEGKPEGQE 207


>At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6)
           almost identical to dnaJ plastid division protein ARC6
           (GI:33436339) [Arabidopsis thaliana];low similarity to
           cell division protein Ftn2 [Synechococcus sp. PCC 7942]
           GI:16226084; contains Pfam profile PF00226: DnaJ domain
          Length = 801

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 120 ASEVLSNERLLKSYTKCLLNEGPCTAELKKIKDKIPEAL 236
           A E LSN R  + Y + LL++   T       DK+P AL
Sbjct: 136 ACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGAL 174


>At2g37070.1 68415.m04549 expressed protein
          Length = 420

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 154 LRSLSLLKTSEASKLSSIGSYLS*ASTAKNRP 59
           LRS    K    S  SSI S LS +STA N+P
Sbjct: 173 LRSSVASKNELTSSCSSIESCLSVSSTASNKP 204


>At5g53080.1 68418.m06594 kinesin light chain-related low similarity
           to kinesin light chain from [Plectonema boryanum]
           GI:2645229, [Loligo pealei] GI:403179; contains Pfam
           profile PF00515: TPR Domain
          Length = 564

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 147 AFRYSRLQKHQSCHRLVRICLEPVRLRIGQE 55
           A  YSR + +    RL+R CL  + + +G E
Sbjct: 405 AASYSRSKNYVEAERLLRTCLNIMEVSVGSE 435


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 102  IDDSFDASEVLSN-ERLLKSYTKCLLNEGPCTAELKKIKDKIPEALETHCAKCTDKQKQM 278
            ++D FD + +++   R+ ++ TK L          ++I     E+ ET    C D ++ +
Sbjct: 873  MEDEFDDALLITRLRRISRNKTKELRECRNAAKSCEEISVTAEESEET--VDCKDHEESL 930

Query: 279  AKQLAQGIKKTH 314
            + + +Q +KK H
Sbjct: 931  SNKPSQKVKKAH 942


>At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CHX3)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 822

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 111 SFDASEVLSNERLLKSYTKCLLNEGPCT 194
           S D S ++SN  ++++  K +L+  PC+
Sbjct: 615 SADGSALISNNNMIRNLNKSVLDVAPCS 642


>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 370

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 210 FSSILQCRALHSVNT*CKT*EAFRYSRLQKHQSCH 106
           F S+L  R LH+  +     E+F Y  L  H++C+
Sbjct: 48  FRSLLDSRELHATRSCIGKTESFLYVCLDLHRNCY 82


>At3g09250.1 68416.m01099 expressed protein
          Length = 244

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
 Frame = +3

Query: 90  KYEPIDDSFDASEVLSNERLLKSYTKCLLNEGPCTAELKKIKDKIPEALETHCAKCTDKQ 269
           K E  + + D   +  +E  LK   +  + E     E  KI+DK+ E  E + A      
Sbjct: 70  KREENNQTADVESISMDENTLKQDLETAVQEENYV-EAAKIRDKLKELQEDNKASVLSAN 128

Query: 270 KQMAKQLAQGIKKTHPELWDEF--ITFYHPQGKYQTSFKDFLES 395
            +  +    G       LW +       HP  K  T +   +ES
Sbjct: 129 SRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMES 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,799,660
Number of Sequences: 28952
Number of extensions: 166720
Number of successful extensions: 480
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)