BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0548 (372 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g17750.1 68416.m02265 protein kinase family protein contains ... 31 0.24 At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 27 3.0 At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl... 26 7.0 >At3g17750.1 68416.m02265 protein kinase family protein contains Pfam profile: PF00069 Eukaryotic protein kinase domain Length = 1138 Score = 31.1 bits (67), Expect = 0.24 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = -3 Query: 157 IDKRLINTKTTFLVGTYLLIPQG 89 +D++LINT FL+G+YL +P G Sbjct: 357 LDEKLINTDNAFLLGSYLDVPIG 379 >At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-) {Saccharomyces cerevisiae}; contains Pfam profiles PF00240: Ubiquitin family, PF00632: HECT-domain (ubiquitin-transferase) Length = 873 Score = 27.5 bits (58), Expect = 3.0 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 2 KSTIKRIIEAILSTAAI*PKTRTSYCLPSPLRY 100 KS K ++ LS PK + +YCLP L + Sbjct: 247 KSCAKSSVKLFLSNCVALPKNQKNYCLPIVLEF 279 >At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl CoA:diacylglycerol acyltransferase (DGAT) identical to gi:5050913, gi:6625553 Length = 520 Score = 26.2 bits (55), Expect = 7.0 Identities = 16/68 (23%), Positives = 36/68 (52%) Frame = +1 Query: 166 LHPHLKTPLKSFLYLMKIVT*VLHYLYVKLKFQNRY*YNKSKLIN*LIVSFKTV*QVYDI 345 L ++ P+ FL+++ +T VL+ +YV L+ + + + ++ IV K V + Sbjct: 200 LQKYISEPVVIFLHIIITMTEVLYPVYVTLRCDSAFLSGVTLMLLTCIVWLKLVSYAHTS 259 Query: 346 FTLSSLSS 369 + + SL++ Sbjct: 260 YDIRSLAN 267 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,162,632 Number of Sequences: 28952 Number of extensions: 99726 Number of successful extensions: 109 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 497853200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -