Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0536
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    26   1.2  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    24   6.5  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    24   6.5  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    23   8.6  

>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 242 LVNDFITFLITKNVIFNKVHTY 177
           +VN+F+T ++ ++  F KVH+Y
Sbjct: 10  IVNEFVTAIVRESDKFAKVHSY 31


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 199 ITFFVIKNVIKSFTNPLFNCHFLPKTNEQIIFAGIIHWDTY 321
           ++F +IKN+    +     C F   ++ ++  +G+   DTY
Sbjct: 337 LSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTY 377


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 184 CTLLKITFFVIKNVIKSFTNPLFNCHFLPK 273
           C  LK+    ++N  K  T  +F+CHF+P+
Sbjct: 8   CQHLKLKPADVENYQKICTQ-IFSCHFVPR 36


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 226 IKSFTNPLFNCHFLP 270
           +K+F N LFN H +P
Sbjct: 907 VKNFDNSLFNLHGIP 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,503
Number of Sequences: 5004
Number of extensions: 16566
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)