Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0535
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    27   0.91 
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   3.7  

>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 251 NSGLVNDFITFLITKNVIFNKVHTY 177
           +  +VN+F+T ++ ++  F KVH+Y
Sbjct: 7   SDSIVNEFVTAIVRESDKFAKVHSY 31


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 217 KNVIKSFTNPLFNCPFLPKT 276
           +N+  +F +P F+ P++PKT
Sbjct: 329 QNLKITFPSPFFHIPYIPKT 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,564
Number of Sequences: 5004
Number of extensions: 17496
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)