Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0535
         (319 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05310.1 68416.m00579 GTP-binding protein-related low similar...    27   3.6  
At2g47530.1 68415.m05932 hypothetical protein                          27   3.6  
At1g80630.1 68414.m09462 leucine-rich repeat family protein            26   6.3  
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to  C...    25   8.3  

>At3g05310.1 68416.m00579 GTP-binding protein-related low similarity
           to rac 1 protein [Physcomitrella patens] GI:7243743;
           contains Pfam profile PF00036: EF hand (domain)
          Length = 648

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 296 RKMIGLFVFGRKGQLNSGLVNDFI 225
           RK++  FVFG K    S L+N FI
Sbjct: 425 RKVVQCFVFGPKNAGKSALLNQFI 448


>At2g47530.1 68415.m05932 hypothetical protein
          Length = 184

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 232 SFTNPLFNCPFLPKTNKPIIFRGIIHC 312
           ++T+P+   P+LPK+N  I   G I C
Sbjct: 38  TYTSPV-KTPYLPKSNPDIAIEGFILC 63


>At1g80630.1 68414.m09462 leucine-rich repeat family protein
          Length = 578

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 10  FFFDGSNYLFIIINNLVHMVFV*STH*I*YN*KYLNY*VIIKLSMFFKYFKYVEIK*VCT 189
           F FDG  YL     +LVH+    +         +L+  +++KL MFF+   ++ +     
Sbjct: 280 FTFDGILYLLDKYQSLVHLNLKGAN--------FLSDEMVMKLGMFFRRLTFLNLSFCSK 331

Query: 190 LLKITFFVI 216
           L  + FF I
Sbjct: 332 LTGLAFFSI 340


>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
           Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
          Length = 543

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 115 NY*VIIKLSMFFKYFKYVEIK*VCTLLKITFFVIKNVIKSFTNPLFNCPFLPKTNKPIIF 294
           N+ +   +   +K+F  +E   +   L   FF+   ++    +  FN P  P   +P+ F
Sbjct: 28  NFELPCSVQHIYKFFDLMETHFLILSLAFLFFISLKLLFGKRHSKFNLP--PSPARPLPF 85

Query: 295 RGIIH 309
            G +H
Sbjct: 86  IGHLH 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,124,500
Number of Sequences: 28952
Number of extensions: 76442
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)