Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0531
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    76   1e-15
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   2.4  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   4.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    24   5.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    23   7.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    23   9.6  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    23   9.6  
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    23   9.6  

>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 75.8 bits (178), Expect = 1e-15
 Identities = 31/56 (55%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
 Frame = +3

Query: 135 FHE-ISRPFNMTYRCYSFSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIF 299
           FH  +++ F+  YRCY  +M+PG ER +V  GGK+I+PPSALE+L+RLN+ YPM+F
Sbjct: 24  FHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLF 79


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 298 NIIGYSILSLVSCSNADGGIIIL 230
           N++G S   L+SCS+ +G I IL
Sbjct: 207 NVVGDSATCLLSCSSRNGEIRIL 229


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +2

Query: 227 W*NNYAPIGIRTTHKT---QYRISYDIQ 301
           W N+YAP  ++  HK     Y  S+DIQ
Sbjct: 773 WENDYAPFLLKEHHKVIGETYVSSFDIQ 800


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 135 FHEISRPFNMTYRCYSFSMLPGNERQ 212
           F +I RP N+  + + +S+ PG+E Q
Sbjct: 186 FMKIERPRNLPGKGHFWSIRPGHEEQ 211


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 87  LLKLTKIEMFQFGFNMFHEISRPFNMTYRC 176
           L ++ ++ +FQ   ++  E+  P ++ YRC
Sbjct: 27  LEEIQRLALFQEELDIIEELDDPVDVWYRC 56


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +1

Query: 109 KCFNSDSICFTKYLGHLI*LIDAIHSLCYLGMRDRTL 219
           + F S++  F  ++ HLI  +++++S+C+LG   + L
Sbjct: 27  RSFMSNNRKFLVHI-HLIPHLNSLYSICFLGFPGQEL 62


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 114 FQFGF-NMFHEISRPFNMTYRCYSFSMLPGNERQD 215
           F  GF +++H++ + F+     + +  LP N R+D
Sbjct: 196 FDAGFADLYHDLDQGFSPVNFVFPWLPLPRNRRRD 230


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 153 PFNMTYRCYSFSMLPGNERQDVER 224
           PF  T R  SF  L  +ERQ +ER
Sbjct: 17  PFERT-RIPSFKKLSDSERQQIER 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,175,603
Number of Sequences: 5004
Number of extensions: 20183
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)