BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0531 (301 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_2727| Best HMM Match : UFD1 (HMM E-Value=0) 62 1e-10 SB_40631| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2 SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 27 2.8 SB_55554| Best HMM Match : AAA (HMM E-Value=0.022) 26 6.5 SB_44934| Best HMM Match : UPF0061 (HMM E-Value=0.0055) 25 8.6 SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 25 8.6 SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13) 25 8.6 SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14) 25 8.6 >SB_2727| Best HMM Match : UFD1 (HMM E-Value=0) Length = 248 Score = 61.7 bits (143), Expect = 1e-10 Identities = 32/56 (57%), Positives = 36/56 (64%) Frame = +3 Query: 132 MFHEISRPFNMTYRCYSFSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIF 299 MF + R F YRCYS +MLPGNER+DVERGGK TRLNI YPM+F Sbjct: 1 MFEPMPRVFKTQYRCYSVAMLPGNERKDVERGGK-----------TRLNIVYPMLF 45 >SB_40631| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 96 Score = 28.3 bits (60), Expect = 1.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 133 CFTKYLGHLI*LIDAIHSLCYLGMRDRT 216 CFT L L ++D +HSL Y RDR+ Sbjct: 36 CFTAVLNILRIVVDDLHSLIYQTARDRS 63 >SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) Length = 1420 Score = 27.1 bits (57), Expect = 2.8 Identities = 11/45 (24%), Positives = 23/45 (51%) Frame = -3 Query: 245 GHNYFTTSFNVLSLIPR*HRE*IASISHIKWPRYFVKHIESELKH 111 G +Y S +++ + HR+ + W + F+ H++S +KH Sbjct: 803 GTDYNNASALIITFVVENHRDEKKNAKAESWEKAFIDHMKSYVKH 847 >SB_55554| Best HMM Match : AAA (HMM E-Value=0.022) Length = 1681 Score = 25.8 bits (54), Expect = 6.5 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -1 Query: 298 NIIGYSILSLVSCSNADGGIIILPPLSTSCLSFPGNIEN 182 N++ Y LVS S+ G + + P TS + PGN+++ Sbjct: 128 NVVFYG--ELVSVSSLYGCFLTMSPQHTSLTTIPGNMKS 164 >SB_44934| Best HMM Match : UPF0061 (HMM E-Value=0.0055) Length = 270 Score = 25.4 bits (53), Expect = 8.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 118 NSDSICFTKYLGHLI*LIDAIHSLCYLGMRDRTLKE 225 N ++ CF KYLG L + A S C G+++ + E Sbjct: 45 NDNNACFGKYLGSLPCISPADVSNCERGVKELSCLE 80 >SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) Length = 3561 Score = 25.4 bits (53), Expect = 8.6 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 216 VERGGKIIMPPSALEQLTRLNIEYPMI 296 V GG +++P +E L++EYP I Sbjct: 811 VYEGGTLVLPNGTVEIREALSLEYPSI 837 >SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13) Length = 255 Score = 25.4 bits (53), Expect = 8.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 118 NSDSICFTKYLGHLI*LIDAIHSLCYLGMRDRTLKE 225 N ++ CF KYLG L + A S C G+++ + E Sbjct: 175 NDNNACFGKYLGSLPCISPADVSNCERGVKELSCLE 210 >SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14) Length = 226 Score = 25.4 bits (53), Expect = 8.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 118 NSDSICFTKYLGHLI*LIDAIHSLCYLGMRDRTLKE 225 N ++ CF KYLG L + A S C G+++ + E Sbjct: 175 NDNNACFGKYLGSLPCISPADVSNCERGVKELSCLE 210 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,452,731 Number of Sequences: 59808 Number of extensions: 142706 Number of successful extensions: 224 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 223 length of database: 16,821,457 effective HSP length: 71 effective length of database: 12,575,089 effective search space used: 352102492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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