Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0531
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2727| Best HMM Match : UFD1 (HMM E-Value=0)                         62   1e-10
SB_40631| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)                27   2.8  
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     26   6.5  
SB_44934| Best HMM Match : UPF0061 (HMM E-Value=0.0055)                25   8.6  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               25   8.6  
SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)                 25   8.6  
SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)                 25   8.6  

>SB_2727| Best HMM Match : UFD1 (HMM E-Value=0)
          Length = 248

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 32/56 (57%), Positives = 36/56 (64%)
 Frame = +3

Query: 132 MFHEISRPFNMTYRCYSFSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIF 299
           MF  + R F   YRCYS +MLPGNER+DVERGGK           TRLNI YPM+F
Sbjct: 1   MFEPMPRVFKTQYRCYSVAMLPGNERKDVERGGK-----------TRLNIVYPMLF 45


>SB_40631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 CFTKYLGHLI*LIDAIHSLCYLGMRDRT 216
           CFT  L  L  ++D +HSL Y   RDR+
Sbjct: 36  CFTAVLNILRIVVDDLHSLIYQTARDRS 63


>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -3

Query: 245 GHNYFTTSFNVLSLIPR*HRE*IASISHIKWPRYFVKHIESELKH 111
           G +Y   S  +++ +   HR+   +     W + F+ H++S +KH
Sbjct: 803 GTDYNNASALIITFVVENHRDEKKNAKAESWEKAFIDHMKSYVKH 847


>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 298 NIIGYSILSLVSCSNADGGIIILPPLSTSCLSFPGNIEN 182
           N++ Y    LVS S+  G  + + P  TS  + PGN+++
Sbjct: 128 NVVFYG--ELVSVSSLYGCFLTMSPQHTSLTTIPGNMKS 164


>SB_44934| Best HMM Match : UPF0061 (HMM E-Value=0.0055)
          Length = 270

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 NSDSICFTKYLGHLI*LIDAIHSLCYLGMRDRTLKE 225
           N ++ CF KYLG L  +  A  S C  G+++ +  E
Sbjct: 45  NDNNACFGKYLGSLPCISPADVSNCERGVKELSCLE 80


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 216 VERGGKIIMPPSALEQLTRLNIEYPMI 296
           V  GG +++P   +E    L++EYP I
Sbjct: 811 VYEGGTLVLPNGTVEIREALSLEYPSI 837


>SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)
          Length = 255

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 NSDSICFTKYLGHLI*LIDAIHSLCYLGMRDRTLKE 225
           N ++ CF KYLG L  +  A  S C  G+++ +  E
Sbjct: 175 NDNNACFGKYLGSLPCISPADVSNCERGVKELSCLE 210


>SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)
          Length = 226

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 NSDSICFTKYLGHLI*LIDAIHSLCYLGMRDRTLKE 225
           N ++ CF KYLG L  +  A  S C  G+++ +  E
Sbjct: 175 NDNNACFGKYLGSLPCISPADVSNCERGVKELSCLE 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,452,731
Number of Sequences: 59808
Number of extensions: 142706
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)