Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0531
(301 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 famil... 57 2e-09
At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 famil... 56 4e-09
At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 famil... 56 4e-09
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil... 54 1e-08
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil... 36 0.007
At1g01590.1 68414.m00076 ferric-chelate reductase, putative simi... 27 3.1
At1g01580.1 68414.m00075 ferric-chelate reductase, putative simi... 27 3.1
At4g39450.1 68417.m05582 expressed protein 26 5.4
At5g46240.1 68418.m05691 inward rectifying potassium channel (KA... 25 9.4
At5g44400.1 68418.m05436 FAD-binding domain-containing protein s... 25 9.4
At1g51210.1 68414.m05760 UDP-glucoronosyl/UDP-glucosyl transfera... 25 9.4
At1g19410.1 68414.m02418 hypothetical protein 25 9.4
>At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 319
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +3
Query: 126 FNMFHEISRPFNMTYRCYSFSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIF 299
F+ +H F +YRCY S + ++ +E G KIIMPPSAL++L L+I+YPM+F
Sbjct: 3 FDGYHYHGTTFEQSYRCYPASFI---DKPQLESGDKIIMPPSALDRLASLHIDYPMLF 57
>At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 315
Score = 56.0 bits (129), Expect = 4e-09
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +3
Query: 156 FNMTYRCYSFSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIF 299
F TYRCY S + ++ +E G KIIMPPSAL++L L I+YPM+F
Sbjct: 13 FEQTYRCYPSSFI---DKPQIESGDKIIMPPSALDRLASLQIDYPMLF 57
>At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 311
Score = 56.0 bits (129), Expect = 4e-09
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +3
Query: 156 FNMTYRCYSFSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIF 299
F TYRCY S + ++ +E G KIIMPPSAL++L L I+YPM+F
Sbjct: 13 FEQTYRCYPSSFI---DKPQIESGDKIIMPPSALDRLASLQIDYPMLF 57
>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 312
Score = 54.4 bits (125), Expect = 1e-08
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +3
Query: 156 FNMTYRCYSFSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIF 299
F YRCY + + ++ +E+G KIIMPPSAL++L L+IEYPM+F
Sbjct: 8 FEQCYRCYPVTFI---DKAHLEKGDKIIMPPSALDRLASLHIEYPMLF 52
>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 280
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 240 MPPSALEQLTRLNIEYPMIF 299
MPPSAL++L L+IEYPM+F
Sbjct: 1 MPPSALDRLASLHIEYPMLF 20
>At1g01590.1 68414.m00076 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile: PF01794 ferric
reductase like transmembrane component
Length = 704
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 NSDSICFTKYLGHLI*LIDAIHSLCY 195
+ SI + +LGHL+ +I H LCY
Sbjct: 202 SESSIKYHIWLGHLVMIIFTSHGLCY 227
>At1g01580.1 68414.m00075 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile: PF01794 ferric
reductase like transmembrane component
Length = 725
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 118 NSDSICFTKYLGHLI*LIDAIHSLCYL 198
+ SI + +LGH++ + +H LCY+
Sbjct: 212 SESSIKYHIWLGHMVMALFTVHGLCYI 238
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 170 ISHIKWPRYFVKHIESELKH 111
IS I W KHIE EL H
Sbjct: 42 ISAISWEAIIQKHIEEELHH 61
>At5g46240.1 68418.m05691 inward rectifying potassium channel (KAT1)
identical to K+ channel [Arabidopsis thaliana]
gi|1165000|emb|CAA63601; Shaker-type channel (1P/6TM),
PMID:11500563
Length = 677
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 222 RGGKIIMPPSALEQLTRLNIE 284
+ GK+I+ PS++E+L RL E
Sbjct: 622 KNGKLILLPSSIEELLRLASE 642
>At5g44400.1 68418.m05436 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 537
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 248 WGHNYFTTSFNVLSLI 201
WG NYF +FN L +I
Sbjct: 502 WGANYFKNNFNRLMMI 517
>At1g51210.1 68414.m05760 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 433
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 151 GHLI*LIDAIHSLCYLGM 204
GHL+ L+D H LC G+
Sbjct: 30 GHLLPLLDLTHQLCLRGL 47
>At1g19410.1 68414.m02418 hypothetical protein
Length = 435
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 142 KYLGHLI*LIDAIHSLCYLGMRDRTLKEVV 231
+Y+ L+D H++C+ ++ LKEV+
Sbjct: 135 RYVDESFQLLDESHTVCFPSLKSLHLKEVI 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,865,916
Number of Sequences: 28952
Number of extensions: 96503
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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