Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0523
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    60   6e-11
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   3.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 60.5 bits (140), Expect = 6e-11
 Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +2

Query: 2   TNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXX 175
           TN KDI  LY                    EL  PGS  L G+ Q+YN  ++AH      
Sbjct: 15  TNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIF 74

Query: 176 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 280
                       N LVPL++GAPD+A+PR+NN  F
Sbjct: 75  FFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTF 109


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 104 DFLIQLELKVLKMFQL 57
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,359
Number of Sequences: 5004
Number of extensions: 11600
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)