Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0512
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    24   5.5  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    23   7.3  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    23   7.3  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    23   9.6  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.6  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    23   9.6  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   9.6  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    23   9.6  

>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 285 ILQGQFNLRMKNEESHNITHRK 220
           I +GQ  LR + EE + + HRK
Sbjct: 336 IEEGQRELRRQEEEHNEVWHRK 357


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 59  RIFNQSIDFLLHFYNFDNN 115
           R FNQ IDFL H + F ++
Sbjct: 408 RHFNQLIDFLKHPHGFTSS 426


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 13  LHGVKLIFVQYFCAVKNFQSINRLPSPFL 99
           LHG  L  +Q FC + +F S N  P   L
Sbjct: 618 LHGFPLTNLQSFCTISSFLS-NDFPLSLL 645


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 244 KPQYYTSKKKFPFIHVH 194
           KPQYY  K  +P  H +
Sbjct: 507 KPQYYIPKDPYPVPHYY 523


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 248 KKATILHIEKEVSLHSRAPSCTRTVF 171
           K+  +LH E+ +S  + +PS +R+ F
Sbjct: 13  KRHPLLHSERNLSRRAVSPSISRSFF 38


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 225 RKRSFPSFTCTKLHAHSFYIFKAGKLPF 142
           R+++  SF CT+    +FY  K  K+ F
Sbjct: 226 REKNSSSFVCTRSSGLTFYDSKREKICF 253


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 254 FILKLNCPCNMECC 295
           FI    CPC + CC
Sbjct: 8   FIFATFCPCFLSCC 21


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 233 LHIEKEVSLHSRAPSCTRTVFIYL 162
           LH+EK  SLHS +  C      YL
Sbjct: 355 LHMEKVKSLHSLSIICLDMAISYL 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,511
Number of Sequences: 5004
Number of extensions: 23993
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)