Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0512
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0569 + 23343861-23344751,23344841-23344984,23345071-233453...    27   3.6  
04_01_0341 - 4442727-4445597                                           26   6.3  
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044     25   8.3  
01_05_0157 + 18699566-18699853,18699956-18700061,18700268-187007...    25   8.3  

>01_05_0569 +
           23343861-23344751,23344841-23344984,23345071-23345309,
           23346096-23346185,23346617-23346644
          Length = 463

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 194 VHVNEGKLLFRCVILWLSSFFILKLNCPCNME 289
           VH+  G L  RCV+LW+S    + L+   NME
Sbjct: 225 VHIWSGSL--RCVVLWMSMVREVHLDDAPNME 254


>04_01_0341 - 4442727-4445597
          Length = 956

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 241 PQYYTSKKKFPFIHVHQVARAQFLYI*SWQTTI*HLSVYRTL 116
           P+  +S  K   IH+H   R  F+   SW T+  HL    TL
Sbjct: 785 PRDDSSFAKLRSIHLHYCPRLTFVLPLSWPTSDSHLPSLETL 826


>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
          Length = 578

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 77  IDFLLHFYNFDNNQRPIHA*MLNGSLPALN 166
           ++ + +F+N+D     +H+ +LN  LP  N
Sbjct: 306 VNLISNFFNYDGQFSWVHSNLLNEDLPNAN 335


>01_05_0157 +
           18699566-18699853,18699956-18700061,18700268-18700712,
           18700852-18700880,18701014-18701207,18701497-18702211,
           18702552-18702571
          Length = 598

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 182 ACNLVHVNEGKLLFRCVILWLSSFFILKLNCPCNMECCV 298
           A N+V  + G+L  R  IL   S+F +K  C   M C +
Sbjct: 181 ARNIVERSFGRLKGRWAILRSPSYFPIKTQCRIIMACAL 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,853,146
Number of Sequences: 37544
Number of extensions: 138141
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)