Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0512
         (300 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      27   3.7  
SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 215 LLFRCVILWLSSFFILKLNCPCNMECC 295
           LL  C +L +S   +L   C C + CC
Sbjct: 13  LLMPCCVLLMSCCVMLMWYCSCRVACC 39


>SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 200 VNEGKLLFRCVILWLSSFFILKL 268
           VN  + ++ CV++W+ SF IL +
Sbjct: 142 VNMKRTVYICVVIWVISFSILAI 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,465,023
Number of Sequences: 59808
Number of extensions: 168304
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)