Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0512
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   3.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   5.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 294 QHSI-LQGQFNLRMKNEESHNITHRKRSFPSFTCTKLHAHSF 172
           QHS+ LQ Q     ++  S + ++++R F  F+  K H H F
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQER-FGYFSSLKDHQHQF 134


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +2

Query: 92  HFYNFDNNQRPIH 130
           ++ N++NN +P+H
Sbjct: 323 NYNNYNNNYKPLH 335


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 173 KLCACNLVHVNEGKLL 220
           K  A   VHVNEG+ L
Sbjct: 122 KTAAWARVHVNEGQFL 137


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 101 NFDNNQRPIH 130
           N++NNQ P H
Sbjct: 47  NYENNQLPTH 56


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 265 FKDEK*RKPQYYTSKKKFPFIHVHQV 188
           F++ K   PQY   +  FP I +  +
Sbjct: 412 FQEHKNTLPQYTVQQLDFPGIEIADI 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,937
Number of Sequences: 438
Number of extensions: 1668
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)