Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0511
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    35   0.004
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    31   0.061
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    29   0.19 
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    27   0.75 
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    27   0.99 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.3  
SPCC553.11c |||transcription factor TFIIA complex small subunit ...    26   2.3  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    25   4.0  
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M...    25   5.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   7.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   9.3  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    24   9.3  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    24   9.3  

>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 208 SSVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQLA 339
           S+  E N  NF+  +     + ++FYAPW  +C +  P + +LA
Sbjct: 31  SNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLA 74


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 31.1 bits (67), Expect = 0.061
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 274 IMFYAPWGRHCTEFYPIWSQLAE 342
           + FYAPW  HC    P + +LAE
Sbjct: 378 VEFYAPWCGHCKNLAPTYEKLAE 400



 Score = 26.6 bits (56), Expect = 1.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 274 IMFYAPWGRHCTEFYPIWSQLAE 342
           + FYAPW  HC    P +   A+
Sbjct: 44  VKFYAPWCGHCKALAPEYESAAD 66


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 265 GNFIMFYAPWGRHCTEFYPIWSQLAEL 345
           G  I FYA W  HC    P++ +L  L
Sbjct: 41  GALIEFYATWCGHCKSLAPVYEELGAL 67


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 298 RHCTEFYPIWSQLAELVNTKDS 363
           R  +EFY +++Q++++VNT D+
Sbjct: 566 RRASEFYILFNQVSDIVNTSDT 587


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 280 FYAPWGRHCTEFYPIWSQLAELVNTKDSKF 369
           FYAPW   C +   ++ Q A+  +TK++ F
Sbjct: 27  FYAPWAAPCKQMNQVFDQFAK--DTKNAVF 54


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 212 ELCSGVTRYGNTNRYGNIFIVVKEYISK 129
           E C  V  YG T  YG +F++  E IS+
Sbjct: 56  ETCK-VKYYGETKTYGEVFVLENERISQ 82


>SPCC553.11c |||transcription factor TFIIA complex small subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 73  EKI*MKTT*KSYLNSHRHCLEIYSFTTMN 159
           EK+  + T K +L+++R C E+++F   N
Sbjct: 50  EKVRSRLTFKGHLDTYRFCDEVWTFIIKN 78


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 114 IEVTFLGCFHLYLFSF 67
           +E   L CF LY+FSF
Sbjct: 51  LEFVILACFFLYVFSF 66


>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 201

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 311 NFIRYGHNWQSWLIPKTPNL 370
           +F+R  H+W +++ P  PNL
Sbjct: 103 DFLRAYHSWNTFVNPDRPNL 122


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 269 FPSIS*IWNLKLLGLYS*TELCSGVTRYGNTN 174
           FP +   W+LKL+G ++      G   YG +N
Sbjct: 589 FPQVRDGWDLKLIGKWTHEGTFPGNELYGESN 620


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 304  CTEFYPIWSQLAELVNTKDSKF 369
            C +F P++ QLA  +  ++SKF
Sbjct: 2297 CKKFIPVFYQLAARLMNENSKF 2318


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 221 NTIPIISNSRSKKWMETLLCFTRHGVDIAQNFIRYGHNWQSWLI 352
           N  PI+ NS +  +    +   R+ VD+ ++F+ +  + + W I
Sbjct: 76  NVEPIV-NSSTYLYRSMKISKDRYSVDVQKHFMHFNSSTREWHI 118


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 247 QI*EMDGNFIMFYAPWGRHCTEFYPIWSQLAELVNTKDSKFAI 375
           Q+   +   I  Y+   R C +   + S++  +  +KDSK+A+
Sbjct: 357 QLINAEDKHIAIYSVETRECIKKISLQSKVTSICLSKDSKYAL 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,546
Number of Sequences: 5004
Number of extensions: 33277
Number of successful extensions: 89
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)