Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0511
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   8.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   8.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    20   8.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 233 IISNSRSKKWMETLLCFTRHGVDIAQNFIRYGH 331
           + SN++SKK+ E  L      ++     + Y H
Sbjct: 39  VFSNNKSKKYFEQTLNELNFNLNYVNKGVTYKH 71


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 208 SSVYEYNPNNFKF 246
           S+ Y YN NN+K+
Sbjct: 319 SNNYNYNNNNYKY 331


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 312 FCAMSTPWRVKHNKVSIHFLDLEFE 238
           FC +   WR+  N + +  L + +E
Sbjct: 287 FCLLDVQWRIPFNGIQMPNLMVFYE 311


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 154 MNILPYLFVFPYLVTPEQSSVYEYNP 231
           +++LP L V     TP + S Y+  P
Sbjct: 346 IHVLPRLLVMRRYNTPSKRSDYDSRP 371


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 208 SSVYEYNPNNFK 243
           S+ Y YN NN+K
Sbjct: 86  SNNYNYNNNNYK 97


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 208 SSVYEYNPNNFK 243
           S+ Y YN NN+K
Sbjct: 86  SNNYNYNNNNYK 97


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 208 SSVYEYNPNNFK 243
           S+ Y YN NN+K
Sbjct: 86  SNNYNYNNNNYK 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,268
Number of Sequences: 438
Number of extensions: 2362
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)