BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0511 (381 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g04980.1 68414.m00497 thioredoxin family protein similar to S... 39 0.001 At2g32920.1 68415.m04036 thioredoxin family protein similar to S... 37 0.005 At1g77510.1 68414.m09026 protein disulfide isomerase, putative s... 34 0.028 At3g54960.1 68416.m06094 thioredoxin family protein similar to p... 33 0.064 At1g35620.1 68414.m04425 thioredoxin family protein similar to S... 33 0.064 At1g07960.3 68414.m00867 thioredoxin family protein low similari... 33 0.085 At1g07960.2 68414.m00866 thioredoxin family protein low similari... 33 0.085 At1g07960.1 68414.m00865 thioredoxin family protein low similari... 33 0.085 At2g47470.2 68415.m05924 thioredoxin family protein similar to p... 32 0.15 At2g47470.1 68415.m05925 thioredoxin family protein similar to p... 32 0.15 At1g21750.2 68414.m02723 protein disulfide isomerase, putative s... 31 0.34 At1g21750.1 68414.m02722 protein disulfide isomerase, putative s... 31 0.34 At5g60640.2 68418.m07611 thioredoxin family protein similar to p... 30 0.60 At5g60640.1 68418.m07610 thioredoxin family protein similar to p... 30 0.60 At5g03470.1 68418.m00303 serine/threonine protein phosphatase 2A... 29 1.4 At4g35890.1 68417.m05097 La domain-containing protein contains P... 29 1.4 At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ... 28 1.8 At5g58000.1 68418.m07256 phosphatase-related weak similarity to ... 27 5.6 At4g27080.1 68417.m03893 thioredoxin family protein contains Pfa... 27 5.6 At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-... 26 9.7 >At1g04980.1 68414.m00497 thioredoxin family protein similar to SP|Q63081 Protein disulfide isomerase A6 precursor (EC 5.3.4.1) {Rattus norvegicus}; contains Pfam profile PF00085: Thioredoxin Length = 443 Score = 39.1 bits (87), Expect = 0.001 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = +1 Query: 208 SSVYEYNPNNFKFQI*EMDGNFIM-FYAPWGRHCTEFYPIWSQLA 339 S V + P+NFK ++ +G ++ F+APW HC P W ++A Sbjct: 28 SPVLQLTPSNFKSKVLNSNGVVLVEFFAPWCGHCQSLTPTWEKVA 72 Score = 34.3 bits (75), Expect = 0.028 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 202 EQSSVYEYNPNNFKFQI*EMDGNFIM-FYAPWGRHCTEFYPIWSQLAELVNTK 357 E S+ E N +NF + E +I+ F+APW HC + P W + A + K Sbjct: 161 EPSASVELNSSNFDELVTESKELWIVEFFAPWCGHCKKLAPEWKKAANNLKGK 213 >At2g32920.1 68415.m04036 thioredoxin family protein similar to SP|Q15084 Protein disulfide isomerase A6 precursor (EC 5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085: Thioredoxin Length = 440 Score = 36.7 bits (81), Expect = 0.005 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +1 Query: 208 SSVYEYNPNNFKFQI*EMDGNFIM-FYAPWGRHCTEFYPIWSQLAELV 348 S V + +NFK ++ +G ++ F+APW HC P W ++A ++ Sbjct: 30 SPVVQLTASNFKSKVLNSNGVVLVEFFAPWCGHCKALTPTWEKVANIL 77 Score = 35.5 bits (78), Expect = 0.012 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +1 Query: 202 EQSSVYEYNPNNFKFQI*EMDGNFIM-FYAPWGRHCTEFYPIWSQLAELVNTK 357 E S+ E N +NF + E + +I+ F+APW HC + P W + A+ + K Sbjct: 160 EPSASVELNASNFDDLVIESNELWIVEFFAPWCGHCKKLAPEWKRAAKNLQGK 212 >At1g77510.1 68414.m09026 protein disulfide isomerase, putative similar to protein disulfide isomerase precursor GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit: PF00085 Thioredoxins Length = 508 Score = 34.3 bits (75), Expect = 0.028 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = +1 Query: 145 FTTMNILPYLFVFPYLVTPEQSS--VYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFY 318 F +IL L +F + E++ V + +NF I + D + FYAPW HC + Sbjct: 6 FACFSILLLLSLFVSSIRSEETKEFVLTLDHSNFTETISKHDFIVVEFYAPWCGHCQKLA 65 Query: 319 PIWSQLAELVNTKDSKFAI 375 P + + A +++ + A+ Sbjct: 66 PEYEKAASELSSHNPPLAL 84 Score = 29.5 bits (63), Expect = 0.79 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 274 IMFYAPWGRHCTEFYPIWSQLA 339 I FYAPW HC + PI ++A Sbjct: 395 IEFYAPWCGHCQKLAPILDEVA 416 >At3g54960.1 68416.m06094 thioredoxin family protein similar to protein disulfide isomerase GI:5902592 from [Volvox carteri f. nagariensis], GI:2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin Length = 579 Score = 33.1 bits (72), Expect = 0.064 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 232 NNF-KFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQLAELVNTKDS 363 NNF + + E + YAPW HC F PI+++L + + DS Sbjct: 445 NNFDEIVLDESKDVLLEIYAPWCGHCQSFEPIYNKLGKYLKGIDS 489 >At1g35620.1 68414.m04425 thioredoxin family protein similar to SP|Q43116 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Ricinus communis}; contains Pfam profile PF00085: Thioredoxin Length = 440 Score = 33.1 bits (72), Expect = 0.064 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +1 Query: 211 SVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYP 321 +V E +NF I D F+ FYAPW HC P Sbjct: 33 TVLELTDSNFDSAISTFDCIFVDFYAPWCGHCKRLNP 69 >At1g07960.3 68414.m00867 thioredoxin family protein low similarity to protein disulfide isomerase 4 [Giardia intestinalis] GI:13489047; contains Pfam profile PF00085: Thioredoxin Length = 146 Score = 32.7 bits (71), Expect = 0.085 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 205 QSSVYEYNPNNFKFQI*EMDGN-FIMFYAPWGRHCTEFYPIWSQLAELVNTKD 360 ++ V P F +I E D F+ F PW +HC + +W L + + D Sbjct: 24 KAEVITLTPETFSDKIKEKDTAWFVKFCVPWCKHCKKLGNLWEDLGKAMEGDD 76 >At1g07960.2 68414.m00866 thioredoxin family protein low similarity to protein disulfide isomerase 4 [Giardia intestinalis] GI:13489047; contains Pfam profile PF00085: Thioredoxin Length = 146 Score = 32.7 bits (71), Expect = 0.085 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 205 QSSVYEYNPNNFKFQI*EMDGN-FIMFYAPWGRHCTEFYPIWSQLAELVNTKD 360 ++ V P F +I E D F+ F PW +HC + +W L + + D Sbjct: 24 KAEVITLTPETFSDKIKEKDTAWFVKFCVPWCKHCKKLGNLWEDLGKAMEGDD 76 >At1g07960.1 68414.m00865 thioredoxin family protein low similarity to protein disulfide isomerase 4 [Giardia intestinalis] GI:13489047; contains Pfam profile PF00085: Thioredoxin Length = 146 Score = 32.7 bits (71), Expect = 0.085 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 205 QSSVYEYNPNNFKFQI*EMDGN-FIMFYAPWGRHCTEFYPIWSQLAELVNTKD 360 ++ V P F +I E D F+ F PW +HC + +W L + + D Sbjct: 24 KAEVITLTPETFSDKIKEKDTAWFVKFCVPWCKHCKKLGNLWEDLGKAMEGDD 76 >At2g47470.2 68415.m05924 thioredoxin family protein similar to protein disulfide isomerase [Dictyostelium discoideum] GI:2627440; contains Pfam profile: PF00085 Thioredoxin Length = 266 Score = 31.9 bits (69), Expect = 0.15 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +1 Query: 190 LVTPEQSSVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQL 336 LV+ V ++F+ ++ + G + FYAPW HC + P + +L Sbjct: 17 LVSAVADDVVVLTDDSFEKEVGKDKGALVEFYAPWCGHCKKLAPEYEKL 65 Score = 30.3 bits (65), Expect = 0.45 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +1 Query: 211 SVYEYNPNNFKFQI*EMDGNFIM-FYAPWGRHCTEFYPIWSQLAELVNTKD 360 +V P+NF + + + + ++ FYAPW HC P + ++A + ++ Sbjct: 142 NVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVATVFKQEE 192 >At2g47470.1 68415.m05925 thioredoxin family protein similar to protein disulfide isomerase [Dictyostelium discoideum] GI:2627440; contains Pfam profile: PF00085 Thioredoxin Length = 361 Score = 31.9 bits (69), Expect = 0.15 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +1 Query: 190 LVTPEQSSVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQL 336 LV+ V ++F+ ++ + G + FYAPW HC + P + +L Sbjct: 17 LVSAVADDVVVLTDDSFEKEVGKDKGALVEFYAPWCGHCKKLAPEYEKL 65 Score = 30.3 bits (65), Expect = 0.45 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +1 Query: 211 SVYEYNPNNFKFQI*EMDGNFIM-FYAPWGRHCTEFYPIWSQLAELVNTKD 360 +V P+NF + + + + ++ FYAPW HC P + ++A + ++ Sbjct: 142 NVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVATVFKQEE 192 >At1g21750.2 68414.m02723 protein disulfide isomerase, putative similar to SP|P29828 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform contains non-consensus GA donor splice site at intron 9 Length = 487 Score = 30.7 bits (66), Expect = 0.34 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = +1 Query: 196 TPEQSSVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQLAELVNT 354 T + V + NF I + D + FYAPW HC + P + + A +++ Sbjct: 26 TETKEFVLTLDHTNFTDTINKHDFIVVEFYAPWCGHCKQLAPEYEKAASALSS 78 Score = 28.7 bits (61), Expect = 1.4 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 280 FYAPWGRHCTEFYPIWSQLA 339 FYAPW HC + PI ++A Sbjct: 399 FYAPWCGHCQKLAPILDEVA 418 >At1g21750.1 68414.m02722 protein disulfide isomerase, putative similar to SP|P29828 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform contains non-consensus GA donor splice site at intron 9 Length = 501 Score = 30.7 bits (66), Expect = 0.34 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = +1 Query: 196 TPEQSSVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQLAELVNT 354 T + V + NF I + D + FYAPW HC + P + + A +++ Sbjct: 26 TETKEFVLTLDHTNFTDTINKHDFIVVEFYAPWCGHCKQLAPEYEKAASALSS 78 Score = 28.7 bits (61), Expect = 1.4 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 280 FYAPWGRHCTEFYPIWSQLA 339 FYAPW HC + PI ++A Sbjct: 399 FYAPWCGHCQKLAPILDEVA 418 >At5g60640.2 68418.m07611 thioredoxin family protein similar to protein disulfide isomerase GI:5902592 from [Volvox carteri f. nagariensis], GI:2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin Length = 536 Score = 29.9 bits (64), Expect = 0.60 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 283 YAPWGRHCTEFYPIWSQLAELVNTKDS 363 YAPW HC P++++LA+ + + DS Sbjct: 467 YAPWCGHCQALEPMYNKLAKHLRSIDS 493 Score = 27.9 bits (59), Expect = 2.4 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Frame = +1 Query: 190 LVTPE--QSSVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQLA 339 L TPE + V NF I + FYAPW HC P ++ A Sbjct: 95 LPTPEIDEKDVVVIKERNFTDVIENNQYVLVEFYAPWCGHCQSLAPEYAAAA 146 >At5g60640.1 68418.m07610 thioredoxin family protein similar to protein disulfide isomerase GI:5902592 from [Volvox carteri f. nagariensis], GI:2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin Length = 597 Score = 29.9 bits (64), Expect = 0.60 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 283 YAPWGRHCTEFYPIWSQLAELVNTKDS 363 YAPW HC P++++LA+ + + DS Sbjct: 467 YAPWCGHCQALEPMYNKLAKHLRSIDS 493 Score = 27.9 bits (59), Expect = 2.4 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Frame = +1 Query: 190 LVTPE--QSSVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQLA 339 L TPE + V NF I + FYAPW HC P ++ A Sbjct: 95 LPTPEIDEKDVVVIKERNFTDVIENNQYVLVEFYAPWCGHCQSLAPEYAAAA 146 >At5g03470.1 68418.m00303 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'alpha) similar to SWISS-PROT:Q28653 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform (PP2A, B subunit, B' delta isoform, PP2A, B subunit, B56 delta isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta isoform, PP2A, B subunit, B'-gamma) [Oryctolagus cuniculus]; contains Pfam domain, PF01603: Protein phosphatase 2A regulatory B subunit (B56 family) Length = 495 Score = 28.7 bits (61), Expect = 1.4 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +3 Query: 24 ICCFRFNLLAT*LMRRRKDINENNLKKLPQFTQA 125 ICCF+F+ T R K+I L +L F Q+ Sbjct: 93 ICCFQFDFTDTLKNAREKEIKRQTLLELVDFIQS 126 >At4g35890.1 68417.m05097 La domain-containing protein contains Pfam PF05383: La domain Length = 523 Score = 28.7 bits (61), Expect = 1.4 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +2 Query: 296 VDIAQNFIRYGHNWQSWLIPKTP 364 V++ +FIR NWQ+W++ + P Sbjct: 433 VEVQGDFIRKRDNWQNWVLRRNP 455 >At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 324 Score = 28.3 bits (60), Expect = 1.8 Identities = 12/59 (20%), Positives = 27/59 (45%) Frame = +1 Query: 193 VTPEQSSVYEYNPNNFKFQI*EMDGNFIMFYAPWGRHCTEFYPIWSQLAELVNTKDSKF 369 + P Q+S++ N + F F + ++ + P RHC + ++ + KD ++ Sbjct: 173 IFPHQASIFPRNVDKFSFSPKQNPHQYVSYRQPLKRHCRPTKKFENTFSDFDSGKDIEY 231 >At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD phosphatase-like 3 [Arabidopsis thaliana] GI:22212705; contains Pfam profiles PF02453: Reticulon, PF00533: BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting factor Length = 1011 Score = 26.6 bits (56), Expect = 5.6 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +1 Query: 1 FIQHNTKLFVVLDLTY*LLN**EGEKI*MKTT*KSYLNSHRHCLE 135 F+Q KL++VLDL + LLN + + YL SH H L+ Sbjct: 687 FLQRQRKLYLVLDLDHTLLN---TTILRDLKPEEEYLKSHTHSLQ 728 >At4g27080.1 68417.m03893 thioredoxin family protein contains Pfam PF00085: Thioredoxin Length = 480 Score = 26.6 bits (56), Expect = 5.6 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = +1 Query: 274 IMFYAPWGRHCTEFYPIWSQLAELVNTK 357 + FYAPW C P W + A+ + + Sbjct: 163 VNFYAPWCYWCNLLKPSWEKAAKQIKER 190 >At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-M4) nearly identical to SP|Q9SEU6 Thioredoxin M-type 4, chloroplast precursor (TRX-M4) {Arabidopsis thaliana} Length = 193 Score = 25.8 bits (54), Expect = 9.7 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 Query: 274 IMFYAPWGRHCTEFYPIWSQLAE 342 + F+APW C +PI QLA+ Sbjct: 109 VEFWAPWCGPCRMIHPIVDQLAK 131 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,277,753 Number of Sequences: 28952 Number of extensions: 160450 Number of successful extensions: 415 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 403 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 415 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 527724392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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