Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0510
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    36   0.002
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    35   0.004
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    33   0.015
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   1.3  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   2.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   3.0  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    25   4.0  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   4.0  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   5.3  
SPCC553.11c |||transcription factor TFIIA complex small subunit ...    25   5.3  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    25   5.3  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.3  

>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 225 NPSNFKFQIEEMDGNFIMFYSPWCXHCT*FYPIWSELA 338
           N  NF+  ++    + ++FY+PWC +C    P + +LA
Sbjct: 37  NSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLA 74


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 249 IEEMDGNFIMFYSPWCXHCT*FYPIWSELAELVNTKDSKFAIAQ 380
           ++E     + FY+PWC HC    P + +LAE   + DS   +A+
Sbjct: 370 MDETKDVLVEFYAPWCGHCKNLAPTYEKLAE-EYSDDSNVVVAK 412



 Score = 29.5 bits (63), Expect = 0.19
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 273 IMFYSPWCXHCT*FYPIWSELAE 341
           + FY+PWC HC    P +   A+
Sbjct: 44  VKFYAPWCGHCKALAPEYESAAD 66


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 33.1 bits (72), Expect = 0.015
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 264 GNFIMFYSPWCXHCT*FYPIWSELAEL 344
           G  I FY+ WC HC    P++ EL  L
Sbjct: 41  GALIEFYATWCGHCKSLAPVYEELGAL 67



 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 207 SSVY*YNPSNF-KFQIEEMDGNFIMFYSPWCXHCT*FYPIWSELAEL 344
           S+V   +  NF K  +++     + FY+ WC +C    P +  L ++
Sbjct: 140 SNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKV 186


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 248 DRRNGWKLYYVLLAMVXTLHIIL 316
           D+R  WKLY+ +L M+  L ++L
Sbjct: 78  DKRLRWKLYFTVLVMLMILDMML 100


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 270 FIMFYSPWCXHCT*FYPIWSELAE 341
           FI +Y P C  C    P+W  + E
Sbjct: 46  FIKYYLPSCGACKRLGPMWDNMVE 69


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 187 YGNTNRYGNIFIVVKEYISK 128
           YG T  YG +F++  E IS+
Sbjct: 63  YGETKTYGEVFVLENERISQ 82


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 113 IEVTFLGCFHLYLFSF 66
           +E   L CF LY+FSF
Sbjct: 51  LEFVILACFFLYVFSF 66


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 259 WMETLLCFTRHGVXIAHNFIRYGQNWQSW 345
           W + +  +   GV +A + ++Y Q W  W
Sbjct: 147 WKDHIGQYNEAGVALAISLLKYFQGWSLW 175


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 108 LNSQRHCLEIYSFTTMNILPYLFVFPYLVAPEQS-SVY*YNPSNFKFQIEEMDGNFI 275
           L     C+++ S  T N   +L   P   A +   +   +N +NF+F ++E   NF+
Sbjct: 409 LKQLEKCVKLVSLDTANEKHFLKHTPNSAAHQSLLNTNMFNDANFEFMVKEHIKNFL 465


>SPCC553.11c |||transcription factor TFIIA complex small subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 107

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 72  EKI*MKTT*KSYLNSQRHCLEIYSFTTMN 158
           EK+  + T K +L++ R C E+++F   N
Sbjct: 50  EKVRSRLTFKGHLDTYRFCDEVWTFIIKN 78


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 279 FYSPWCXHCT*FYPIWSELAELVNTKDSKFAI 374
           FY+ WC  C    P   +L+E  N K S  A+
Sbjct: 42  FYADWCGPCKYLKPFLEKLSE-QNQKASFIAV 72


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 290 MVXTLHIILSDMVRIGRAG*YQGL 361
           M  T+ I++SD+V + + G YQG+
Sbjct: 194 MNSTVSILMSDIVPLKQRGTYQGI 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,285
Number of Sequences: 5004
Number of extensions: 28841
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)