Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0496
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   4.5  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   7.9  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 140 SPKFLAS*FCHICQCTYHQQVRP 72
           SP  LAS + H   CT  Q++ P
Sbjct: 649 SPYLLASGYSHRLDCTLSQRIEP 671


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 99  LTNMTKLTCKKFWRTRGSWSRIWIACSARAS 191
           L   T+ +C   +   G+W  IW   S +++
Sbjct: 68  LPEKTRFSCSPIYIKEGNWHYIWTCTSLKSN 98


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 189 LPLPSTQSIYDSRSLLFSKISCKLI 115
           +P P    IY+ R   FSK +C+ I
Sbjct: 676 VPFPRPGEIYEKRCDYFSKYACQNI 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,815
Number of Sequences: 5004
Number of extensions: 25258
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)